User contributions
From Genome Analysis Wiki
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- 14:40, 29 November 2010 (diff | hist) . . (+123) . . SplitPed
- 14:39, 29 November 2010 (diff | hist) . . (+140) . . SplitPed (→Example Commands)
- 14:36, 29 November 2010 (diff | hist) . . (+781) . . SplitPed
- 14:28, 29 November 2010 (diff | hist) . . (+2,398) . . N SplitPed (Created page with 'This page documents the splitPed program, which splits a pedigree file into smaller files with subsets of markers. == Input Files == === Required Input Files === ==== Pedigree f…')
- 12:50, 29 November 2010 (diff | hist) . . (+660) . . Mach DAC
- 08:29, 29 November 2010 (diff | hist) . . (+437) . . MaCH: machX
- 08:27, 29 November 2010 (diff | hist) . . (+74) . . Thunder
- 08:22, 29 November 2010 (diff | hist) . . (+140) . . MaCH FAQ
- 21:13, 28 November 2010 (diff | hist) . . (+4) . . MaCH FAQ (→Why and how to perform a 2-step imputation?)
- 21:12, 28 November 2010 (diff | hist) . . (+167) . . N Mach DAC (Created page with 'This is the MaCH Divide and Conquer page, documenting how to break the genome into smaller pieces before imputation/phasing and how to ligate after imputation/phasing.')
- 21:10, 28 November 2010 (diff | hist) . . (+642) . . MaCH FAQ
- 21:05, 28 November 2010 (diff | hist) . . (-1) . . MaCH FAQ (→Why and how to perform a 2-step imputation?)
- 21:04, 28 November 2010 (diff | hist) . . (+59) . . MaCH FAQ (→Why and how to perform a 2-step imputation?)
- 09:49, 26 November 2010 (diff | hist) . . (+281) . . MaCH: machX (→Impute)
- 09:47, 26 November 2010 (diff | hist) . . (+260) . . MaCH: machX (→Phase Your Own Data)
- 09:44, 26 November 2010 (diff | hist) . . (-11) . . MaCH: machX (→Reference Haplotypes)
- 09:44, 26 November 2010 (diff | hist) . . (+12) . . MaCH: machX
- 09:43, 26 November 2010 (diff | hist) . . (+12) . . MaCH: machX
- 09:42, 26 November 2010 (diff | hist) . . (-1) . . MaCH: machX
- 09:41, 26 November 2010 (diff | hist) . . (0) . . MaCH: machX
- 09:40, 26 November 2010 (diff | hist) . . (+1,018) . . N MaCH: machX (Created page with 'This page documents how to perform X chromosome (non-pseudo-autosomal part) imputation using MaCH [http://www.sph.umich.edu/csg/yli/mach] and minimac [http://genome.sph.umich.edu…')
- 08:34, 26 November 2010 (diff | hist) . . (0) . . MaCH (current)
- 08:33, 26 November 2010 (diff | hist) . . (+42) . . MaCH
- 07:17, 24 November 2010 (diff | hist) . . (+5) . . MaCH FAQ (→How do I get reference files for an region of interest?)
- 16:36, 19 November 2010 (diff | hist) . . (+33) . . MaCH FAQ (→How long does imputation take?)
- 18:22, 21 October 2010 (diff | hist) . . (+1) . . Haploxt (→--r2Threshold or -t) (current)
- 18:22, 21 October 2010 (diff | hist) . . (+34) . . Haploxt
- 18:20, 21 October 2010 (diff | hist) . . (+307) . . Haploxt (→download)
- 18:11, 21 October 2010 (diff | hist) . . (-1) . . Haploxt (→.freq)
- 18:10, 21 October 2010 (diff | hist) . . (+516) . . Haploxt
- 18:05, 21 October 2010 (diff | hist) . . (-2,290) . . Haploxt
- 13:31, 21 October 2010 (diff | hist) . . (+369) . . Haploxt
- 09:57, 21 October 2010 (diff | hist) . . (+35) . . Haploxt
- 09:56, 21 October 2010 (diff | hist) . . (+857) . . Haploxt
- 09:52, 21 October 2010 (diff | hist) . . (+4,021) . . N Haploxt (Created page with 'haploxt is a C/C++ software developed by [https://www.sph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<su…')
- 09:34, 21 October 2010 (diff | hist) . . (+37) . . CalcMatch
- 16:04, 15 October 2010 (diff | hist) . . (+12) . . Thunder
- 15:59, 15 October 2010 (diff | hist) . . (+198) . . Thunder
- 15:56, 15 October 2010 (diff | hist) . . (+60) . . Thunder
- 15:56, 15 October 2010 (diff | hist) . . (+413) . . Thunder
- 15:51, 15 October 2010 (diff | hist) . . (+246) . . Thunder
- 15:48, 15 October 2010 (diff | hist) . . (+16) . . Thunder
- 15:41, 15 October 2010 (diff | hist) . . (+1) . . Thunder
- 15:40, 15 October 2010 (diff | hist) . . (+15) . . Thunder
- 15:40, 15 October 2010 (diff | hist) . . (+177) . . Thunder
- 15:29, 15 October 2010 (diff | hist) . . (+109) . . Thunder
- 15:22, 15 October 2010 (diff | hist) . . (+348) . . Thunder
- 15:17, 15 October 2010 (diff | hist) . . (+75) . . Thunder
- 13:12, 15 October 2010 (diff | hist) . . (+112) . . Thunder
- 13:02, 15 October 2010 (diff | hist) . . (+77) . . Thunder
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