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Jump to navigationJump to search- 14:40, 29 November 2010 diff hist +123 SplitPed
- 14:39, 29 November 2010 diff hist +140 SplitPed →Example Commands
- 14:36, 29 November 2010 diff hist +781 SplitPed
- 14:28, 29 November 2010 diff hist +2,398 N SplitPed Created page with 'This page documents the splitPed program, which splits a pedigree file into smaller files with subsets of markers. == Input Files == === Required Input Files === ==== Pedigree f…'
- 12:50, 29 November 2010 diff hist +660 Mach DAC
- 08:29, 29 November 2010 diff hist +437 MaCH: machX
- 08:27, 29 November 2010 diff hist +74 Thunder
- 08:22, 29 November 2010 diff hist +140 MaCH FAQ
- 21:13, 28 November 2010 diff hist +4 MaCH FAQ →Why and how to perform a 2-step imputation?
- 21:12, 28 November 2010 diff hist +167 N Mach DAC Created page with 'This is the MaCH Divide and Conquer page, documenting how to break the genome into smaller pieces before imputation/phasing and how to ligate after imputation/phasing.'
- 21:10, 28 November 2010 diff hist +642 MaCH FAQ
- 21:05, 28 November 2010 diff hist -1 MaCH FAQ →Why and how to perform a 2-step imputation?
- 21:04, 28 November 2010 diff hist +59 MaCH FAQ →Why and how to perform a 2-step imputation?
- 09:49, 26 November 2010 diff hist +281 MaCH: machX →Impute
- 09:47, 26 November 2010 diff hist +260 MaCH: machX →Phase Your Own Data
- 09:44, 26 November 2010 diff hist -11 MaCH: machX →Reference Haplotypes
- 09:44, 26 November 2010 diff hist +12 MaCH: machX
- 09:43, 26 November 2010 diff hist +12 MaCH: machX
- 09:42, 26 November 2010 diff hist -1 MaCH: machX
- 09:41, 26 November 2010 diff hist 0 MaCH: machX
- 09:40, 26 November 2010 diff hist +1,018 N MaCH: machX Created page with 'This page documents how to perform X chromosome (non-pseudo-autosomal part) imputation using MaCH [http://www.sph.umich.edu/csg/yli/mach] and minimac [http://genome.sph.umich.edu…'
- 08:34, 26 November 2010 diff hist 0 MaCH current
- 08:33, 26 November 2010 diff hist +42 MaCH
- 07:17, 24 November 2010 diff hist +5 MaCH FAQ →How do I get reference files for an region of interest?
- 16:36, 19 November 2010 diff hist +33 MaCH FAQ →How long does imputation take?
- 18:22, 21 October 2010 diff hist +1 Haploxt →--r2Threshold or -t current
- 18:22, 21 October 2010 diff hist +34 Haploxt
- 18:20, 21 October 2010 diff hist +307 Haploxt →download
- 18:11, 21 October 2010 diff hist -1 Haploxt →.freq
- 18:10, 21 October 2010 diff hist +516 Haploxt
- 18:05, 21 October 2010 diff hist -2,290 Haploxt
- 13:31, 21 October 2010 diff hist +369 Haploxt
- 09:57, 21 October 2010 diff hist +35 Haploxt
- 09:56, 21 October 2010 diff hist +857 Haploxt
- 09:52, 21 October 2010 diff hist +4,021 N Haploxt Created page with 'haploxt is a C/C++ software developed by [https://www.sph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<su…'
- 09:34, 21 October 2010 diff hist +37 CalcMatch
- 16:04, 15 October 2010 diff hist +12 Thunder
- 15:59, 15 October 2010 diff hist +198 Thunder
- 15:56, 15 October 2010 diff hist +60 Thunder
- 15:56, 15 October 2010 diff hist +413 Thunder
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- 15:22, 15 October 2010 diff hist +348 Thunder
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- 13:12, 15 October 2010 diff hist +112 Thunder
- 13:02, 15 October 2010 diff hist +77 Thunder