User contributions
29 November 2010
SplitPed
Example Commands
+181
SplitPed
no edit summary
+123
SplitPed
Example Commands
+140
SplitPed
no edit summary
+781
SplitPed
Created page with 'This page documents the splitPed program, which splits a pedigree file into smaller files with subsets of markers. == Input Files == === Required Input Files === ==== Pedigree f…'
Mach DAC
no edit summary
+660
MaCH: machX
no edit summary
+437
Thunder
no edit summary
+74
MaCH FAQ
no edit summary
+140
28 November 2010
MaCH FAQ
Why and how to perform a 2-step imputation?
+4
Mach DAC
Created page with 'This is the MaCH Divide and Conquer page, documenting how to break the genome into smaller pieces before imputation/phasing and how to ligate after imputation/phasing.'
MaCH FAQ
no edit summary
+642
MaCH FAQ
Why and how to perform a 2-step imputation?
-1
MaCH FAQ
Why and how to perform a 2-step imputation?
+59
26 November 2010
MaCH: machX
Impute
+281
MaCH: machX
Phase Your Own Data
+260
MaCH: machX
Reference Haplotypes
-11
MaCH: machX
no edit summary
+12
MaCH: machX
no edit summary
+12
MaCH: machX
no edit summary
-1
MaCH: machX
no edit summary
MaCH: machX
Created page with 'This page documents how to perform X chromosome (non-pseudo-autosomal part) imputation using MaCH [http://www.sph.umich.edu/csg/yli/mach] and minimac [http://genome.sph.umich.edu…'
MaCH
no edit summary
MaCH
no edit summary
+42
24 November 2010
19 November 2010
21 October 2010
Haploxt
--r2Threshold or -t
+1
Haploxt
no edit summary
+34
Haploxt
download
+307
Haploxt
.freq
-1
Haploxt
no edit summary
+516
Haploxt
no edit summary
-2,290
Haploxt
no edit summary
+369
Haploxt
no edit summary
+35
Haploxt
no edit summary
+857
Haploxt
Created page with 'haploxt is a C/C++ software developed by [https://www.sph.umich.edu/csg/yli/ Yun Li] and [https://www.sph.umich.edu/csg/abecasis/ Goncalo Abecasis]. It calculates LD (D' and r<su…'
CalcMatch
no edit summary
+37
15 October 2010
Thunder
no edit summary
+12
Thunder
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+198
Thunder
no edit summary
+60
Thunder
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+413
Thunder
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+246
Thunder
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+16
Thunder
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+1
Thunder
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+15
Thunder
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+177
Thunder
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+109
Thunder
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+348
Thunder
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+75
Thunder
no edit summary
+112
