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From Genome Analysis Wiki
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- 22:40, 29 August 2012 (diff | hist) . . (+161) . . N Talk:LASER (Created page with 'We will add tips: how to parallel processing to save time, how to prepare reference panel common tricks to avoid - strand flip and/or throw tri-allelic sites')
- 22:37, 29 August 2012 (diff | hist) . . (+964) . . N LASER (Created page with 'LASER Manual LASER is xxxx. To use LASER, please read part1 and part2. Also example will guide you through a complete procedure of how to use laser to infer ancestry. If you ha…')
- 15:06, 5 July 2012 (diff | hist) . . (-5) . . EPACTS (→Join in EPACTS mailing list)
- 23:18, 18 June 2012 (diff | hist) . . (+161) . . LiftMap.py (current)
- 19:47, 18 June 2012 (diff | hist) . . (-30) . . LiftOver (→Use RsMergeArch and SNPHistory)
- 15:08, 7 June 2012 (diff | hist) . . (+166) . . Exome Chip Design (→Cautious Sites)
- 22:14, 6 June 2012 (diff | hist) . . (+178) . . Exome Chip Design (→Assay Design Rates)
- 22:18, 2 June 2012 (diff | hist) . . (+12) . . QPLOT
- 10:36, 1 June 2012 (diff | hist) . . (+1,205) . . QPLOT (→Parameters)
- 10:27, 1 June 2012 (diff | hist) . . (+45) . . QPLOT (→Command line)
- 11:07, 7 March 2012 (diff | hist) . . (+58) . . Rare variant tests (→Summary of rare variant tests for sequence data)
- 13:36, 17 February 2012 (diff | hist) . . (+233) . . QPLOT (→Input files)
- 13:20, 17 February 2012 (diff | hist) . . (-10) . . QPLOT (→Source Code Distribution)
- 11:45, 16 February 2012 (diff | hist) . . (+1) . . QPLOT (→Gallery of examples)
- 11:45, 16 February 2012 (diff | hist) . . (+1) . . QPLOT (→Built-in example)
- 11:45, 16 February 2012 (diff | hist) . . (-1) . . QPLOT (→Parameters)
- 11:42, 16 February 2012 (diff | hist) . . (+8) . . QPLOT (→Input files)
- 11:41, 16 February 2012 (diff | hist) . . (0) . . QPLOT (→Input files)
- 11:41, 16 February 2012 (diff | hist) . . (+1) . . QPLOT (→Source Code Distribution)
- 11:37, 16 February 2012 (diff | hist) . . (-2) . . QPLOT (→Source Code Distribution)
- 11:37, 16 February 2012 (diff | hist) . . (+574) . . QPLOT (→Source Code Distribution)
- 16:35, 15 February 2012 (diff | hist) . . (+105) . . QPLOT (→Source Code Distribution)
- 16:33, 15 February 2012 (diff | hist) . . (+1,230) . . QPLOT
- 09:52, 15 February 2012 (diff | hist) . . (-79) . . QPLOT (→Diagnose sequencing quality)
- 08:58, 15 February 2012 (diff | hist) . . (+7) . . QPLOT (→Parameters)
- 08:57, 15 February 2012 (diff | hist) . . (+351) . . QPLOT (→Parameters)
- 16:55, 14 February 2012 (diff | hist) . . (+56) . . QPLOT (→Command line)
- 16:52, 14 February 2012 (diff | hist) . . (-1) . . QPLOT (→Introduction)
- 16:49, 14 February 2012 (diff | hist) . . (0) . . QPLOT (→Introduction)
- 12:43, 14 February 2012 (diff | hist) . . (+95) . . QPLOT (→Gallery of examples)
- 12:40, 14 February 2012 (diff | hist) . . (-6) . . QPLOT (→Gallery of examples)
- 12:39, 14 February 2012 (diff | hist) . . (+9) . . QPLOT (→Diagnose sequencing quality)
- 12:36, 14 February 2012 (diff | hist) . . (+9) . . QPLOT (→Diagnose sequencing quality)
- 12:35, 14 February 2012 (diff | hist) . . (+3) . . QPLOT (→Diagnose sequencing quality)
- 12:34, 14 February 2012 (diff | hist) . . (+1) . . QPLOT (→Gallery of examples)
- 12:33, 14 February 2012 (diff | hist) . . (-4) . . QPLOT (→Usage)
- 12:30, 14 February 2012 (diff | hist) . . (+281) . . QPLOT (→Introduction)
- 12:29, 14 February 2012 (diff | hist) . . (+44) . . QPLOT
- 12:14, 14 February 2012 (diff | hist) . . (+41) . . m QPLOT (→Where to Find It)
- 12:13, 14 February 2012 (diff | hist) . . (+398) . . m QPLOT (→Where to Find It)
- 12:02, 14 February 2012 (diff | hist) . . (+2) . . QPLOT (→Command line)
- 12:02, 14 February 2012 (diff | hist) . . (-8) . . QPLOT (→Example)
- 00:08, 14 February 2012 (diff | hist) . . (+1,310) . . QPLOT (→Example)
- 00:02, 14 February 2012 (diff | hist) . . (0) . . N File:WrongBarCoding.pdf (current)
- 00:02, 14 February 2012 (diff | hist) . . (0) . . N File:WrongBaseQual.pdf (current)
- 23:46, 13 February 2012 (diff | hist) . . (+2,551) . . QPLOT
- 23:44, 13 February 2012 (diff | hist) . . (0) . . N File:Qplot.Pool.9847.pdf (current)
- 23:38, 13 February 2012 (diff | hist) . . (0) . . N File:Qplot.pdf (current)
- 23:06, 13 February 2012 (diff | hist) . . (+99) . . m QPLOT (→Output files)
- 23:02, 13 February 2012 (diff | hist) . . (+86) . . QPLOT (→Parameters)
- 22:56, 13 February 2012 (diff | hist) . . (+5) . . m QPLOT (→Input files)
- 20:12, 13 February 2012 (diff | hist) . . (+50) . . QPLOT (→Binary Download)
- 20:11, 13 February 2012 (diff | hist) . . (+63) . . QPLOT (→Binary Download)
- 20:09, 13 February 2012 (diff | hist) . . (+495) . . QPLOT (→Where to Find It)
- 23:09, 16 January 2012 (diff | hist) . . (-169) . . QPLOT
- 23:08, 16 January 2012 (diff | hist) . . (+3) . . Template:ToolGitRepo (Undo revision 4263 by Zhanxw (Talk))
- 23:07, 16 January 2012 (diff | hist) . . (-3) . . Template:ToolGitRepo (→Downloading From GitHub Without Git)
- 16:20, 21 November 2011 (diff | hist) . . (+194) . . Talk:QPLOT (current)
- 15:06, 31 October 2011 (diff | hist) . . (+8) . . UMAKE (→Common Problems)
- 15:05, 31 October 2011 (diff | hist) . . (+652) . . UMAKE (→Software Components)
- 16:27, 27 September 2011 (diff | hist) . . (-26) . . LiftOver
- 23:39, 23 September 2011 (diff | hist) . . (+3) . . LiftOver
- 23:37, 23 September 2011 (diff | hist) . . (+489) . . LiftOver
- 13:53, 29 August 2011 (diff | hist) . . (+5) . . Talk:QPLOT
- 13:53, 29 August 2011 (diff | hist) . . (+2,525) . . N Talk:QPLOT (Created page with 'Qplot process each aligned bam files. (1) Empirical vs reported Phred score: Conditioning on the reported base quality, we count the total time of bases that matches or not match…')
- 11:34, 10 August 2011 (diff | hist) . . (+29) . . LiftOver (→Resources)
- 11:34, 10 August 2011 (diff | hist) . . (+3,973) . . N LiftMap.py (Created page with '<source lang="python"> #!/usr/bin/python import sys, os def usage(): print("%s -m old.map -p old.ped -d old.dat -o new.prefix" % sys.argv[0] ) print("lift old.map (optio…')
- 11:33, 10 August 2011 (diff | hist) . . (-21) . . LiftRsNumber.py (current)
- 11:31, 10 August 2011 (diff | hist) . . (+1,833) . . N LiftRsNumber.py (Created page with '<syntaxhighlight lang="python"> #!/usr/bin/python import sys, os def usage(): print("%s file: lift over rs number. " % sys.argv[0] ) print("file should look like:") …')
- 11:24, 10 August 2011 (diff | hist) . . (+123) . . LiftOver
- 11:23, 10 August 2011 (diff | hist) . . (+4,853) . . LiftOver
- 11:17, 10 August 2011 (diff | hist) . . (+4) . . Minimac: 1000 Genomes Imputation Cookbook (→Your Own Data)
- 11:17, 10 August 2011 (diff | hist) . . (+3) . . Minimac: 1000 Genomes Imputation Cookbook (→Your Own Data)
- 11:16, 10 August 2011 (diff | hist) . . (+117) . . Minimac: 1000 Genomes Imputation Cookbook (→Your Own Data)
- 11:49, 9 August 2011 (diff | hist) . . (+4,316) . . LiftOver
- 17:11, 8 August 2011 (diff | hist) . . (+4,351) . . N LiftOver (Created page with 'LiftOver LiftOver is a necesary step to bring all genetical analysis back to the same reference build. Particularly, our current data are mainly in either NCBI build 36 (UCSC h…')
- 10:04, 12 July 2011 (diff | hist) . . (+155) . . UMAKE (→Exercise with Example Resources)
- 10:24, 29 June 2011 (diff | hist) . . (+243) . . Introduction to new students (→Unix)
- 22:03, 29 September 2010 (diff | hist) . . (+200) . . Tramp (→Where to get it)
- 04:35, 27 August 2010 (diff | hist) . . (+50) . . BaseQualityCheck (current)
- 17:33, 15 July 2010 (diff | hist) . . (+1,194) . . N Introduction to new students (Created page with 'Introduction to New Students * R/C++/perl/python code snipplets / toy examples of various packages [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources…')
- 01:14, 13 May 2010 (diff | hist) . . (+393) . . Karma (→Optional flags)
- 00:00, 13 May 2010 (diff | hist) . . (0) . . BaseQualityCheck
- 00:00, 13 May 2010 (diff | hist) . . (+163) . . BaseQualityCheck
- 23:01, 11 May 2010 (diff | hist) . . (+87) . . BaseQualityCheck
- 22:59, 11 May 2010 (diff | hist) . . (+355) . . BaseQualityCheck
- 22:50, 11 May 2010 (diff | hist) . . (+279) . . BaseQualityCheck
- 22:42, 11 May 2010 (diff | hist) . . (+8) . . BaseQualityCheck
- 22:40, 11 May 2010 (diff | hist) . . (+1,324) . . N BaseQualityCheck (Created page with ''''Base Quality Check (May 11, 2010 - Paul, Xiaowei)''' '''Location''': $(repository)/baseQualityCheck/baseQualityCheck '''Algorithm''': It read SAM/BAM file line by line; th…')
- 22:31, 11 May 2010 (diff | hist) . . (+132) . . Software (→Read Mapping)
- 22:17, 13 April 2010 (diff | hist) . . (-1) . . Karma
- 22:17, 13 April 2010 (diff | hist) . . (+117) . . Karma
- 22:14, 13 April 2010 (diff | hist) . . (+450) . . Karma
- 16:49, 12 April 2010 (diff | hist) . . (+537) . . Karma
- 17:36, 30 March 2010 (diff | hist) . . (-75) . . Karma
- 18:07, 29 March 2010 (diff | hist) . . (+131) . . Karma
- 13:53, 24 March 2010 (diff | hist) . . (+34) . . Karma
- 09:07, 24 March 2010 (diff | hist) . . (+353) . . Karma
- 23:53, 23 March 2010 (diff | hist) . . (+308) . . Karma
- 23:52, 23 March 2010 (diff | hist) . . (+496) . . Karma
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