User contributions

(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)

• 23:31, 11 May 2016 (diff | hist) . . (+208)‎ . . Rvtests ‎ (current)
• 17:33, 15 July 2015 (diff | hist) . . (-40)‎ . . LiftOver ‎ (→‎Resources) (current)
• 21:37, 24 March 2015 (diff | hist) . . (-254)‎ . . RareMETALS ‎ (→‎A Simple Tutorial for Using the rareMETALS.range function)
• 21:16, 24 March 2015 (diff | hist) . . (+33)‎ . . RareMETALS ‎
• 21:59, 13 January 2015 (diff | hist) . . (+57)‎ . . RvTests ‎ (current)
• 21:57, 13 January 2015 (diff | hist) . . (-1,854)‎ . . Rvtests ‎
• 14:43, 12 January 2015 (diff | hist) . . (+7,561)‎ . . Rvtests ‎
• 00:40, 14 October 2014 (diff | hist) . . (+182)‎ . . LiftOver ‎ (→‎Resources)
• 13:53, 12 August 2014 (diff | hist) . . (+3,974)‎ . . N Ancestry ‎ (Created page with "= Introduction = Ancestry can infer ancestry using sequence reads in the Principal Component (PC) space. It is suited for targeted/exome sequencing or whole genome sequenci...") (current)
• 09:41, 10 July 2014 (diff | hist) . . (+155)‎ . . LASER ‎ (→‎Introduction)
• 10:12, 14 February 2014 (diff | hist) . . (+262)‎ . . LiftOver ‎ (→‎Resources)
• 17:21, 29 January 2014 (diff | hist) . . (+97)‎ . . RvTests ‎
• 17:11, 29 January 2014 (diff | hist) . . (+6,391)‎ . . N Template:Other uses ‎ (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
• 17:11, 29 January 2014 (diff | hist) . . (+6,391)‎ . . N Template:Main ‎ (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
• 17:05, 29 January 2014 (diff | hist) . . (+6,391)‎ . . N Template:Documentation/docspace ‎ (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
• 17:04, 29 January 2014 (diff | hist) . . (+6,391)‎ . . N Template:Documentation/template page ‎ (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
• 17:03, 29 January 2014 (diff | hist) . . (+6,391)‎ . . N Template:Documentation/end box ‎ (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
• 17:02, 29 January 2014 (diff | hist) . . (+11,288)‎ . . N Template:Pp-meta ‎ (Created page with "{{#ifeq:{{#switch:{{lc:{{{type}}}}} |move=<!-- -->{{#ifeq: {{#switch:{{lc:{{{demolevel|undefined}}}}} |semi |autoconfirmed = autoconfirmed |...") (current)
• 17:02, 29 January 2014 (diff | hist) . . (+1,092)‎ . . N Template:Documentation/end box2 ‎ (Created page with "<noinclude><div></noinclude><div style="clear: both;"></div><!--So right or left floating items don't stick out of the doc box.--> </div><!--End of green doc box--><!-- Link...") (current)
• 17:01, 29 January 2014 (diff | hist) . . (+3,563)‎ . . N Template:Pp-template ‎ (Created page with "<includeonly>{{pp-meta |type={{#switch:{{{demolevel|{{#ifeq:{{PROTECTIONLEVEL:edit}}-{{PROTECTIONLEVEL:move}}|-sysop|move|{{PROTECTIONLEVEL:edit}}}}}}} |semi |autoconfir...") (current)
• 17:01, 29 January 2014 (diff | hist) . . (+1,960)‎ . . N Template:Documentation/start box ‎ (Created page with "<!-- Start of green doc box --><div id="template-documentation" class="template-documentation iezoomfix"><!-- Add the heading at the top of the doc box: -->{{#ifeq: {{{hea...") (current)
• 16:56, 29 January 2014 (diff | hist) . . (+641)‎ . . N Template:Documentation/start box2 ‎ (Created page with "{{documentation/start box | preload = {{{preload|}}} <!--Allow custom preloads--> | heading = {{{heading|¬}}} <!--Empty but defined means no header--> | heading-style = {...") (current)
• 16:56, 29 January 2014 (diff | hist) . . (+435)‎ . . N Template:Template other ‎ (Created page with "{{#switch: <!--If no or empty "demospace" parameter then detect namespace--> {{#if:{{{demospace|}}} | {{lc: {{{demospace}}} }} <!--Use lower case "demospace"--> | {...") (current)
• 16:52, 29 January 2014 (diff | hist) . . (+117)‎ . . N Template:Str left ‎ (Created page with "<includeonly>{{ {{{|safesubst:}}}padleft:|{{{2|1}}}|{{{1}}}}}</includeonly><noinclude> {{documentation}} </noinclude>") (current)
• 16:51, 29 January 2014 (diff | hist) . . (+151)‎ . . N Template:Namespace detect ‎ (Created page with "{{#invoke:Namespace detect|main}}<noinclude> {{documentation}} <!-- Categories go on the /doc subpage, and interwikis go on Wikidata. --> </noinclude>") (current)
• 16:49, 29 January 2014 (diff | hist) . . (+2,382)‎ . . N Template:Documentation ‎ (Created page with "<!-- Automatically add {{template sandbox notice}} when on a /sandbox page. -->{{#ifeq: {{SUBPAGENAME}} | sandbox | <div style="clear: both;"></div>{{template sandbox notice...") (current)
• 16:48, 29 January 2014 (diff | hist) . . (+76)‎ . . N Template:Hatnote ‎ (Created page with "<div class="dablink">{{{1}}}</div><noinclude> {{documentation}} </noinclude>") (current)
• 16:47, 29 January 2014 (diff | hist) . . (+1,526)‎ . . N Template:About ‎ (Created page with "{{Hatnote|<!-- -->{{#if: {{{1|}}}|<!-- -->This {{namespace detect|main=article|category=category|other=page}} is about {{{1}}}. }}<!-- -->For {{#if:{{{2|}}}|{{{2}}}...") (current)
• 12:27, 26 November 2013 (diff | hist) . . (+108)‎ . . N Talk:RAREMETAL ‎ (Created page with "Xiaowei: It's necessary to include a wiki to explain software outputs, especially for people outside of CSG.") (current)
• 12:25, 26 November 2013 (diff | hist) . . (+118)‎ . . RAREMETAL ‎ (Undo revision 9044 by Shuang Feng (talk))
• 12:12, 26 November 2013 (diff | hist) . . (+118)‎ . . RAREMETAL ‎ (Undo revision 9041 by Shuang Feng (talk))
• 11:35, 26 November 2013 (diff | hist) . . (+119)‎ . . RAREMETAL ‎
• 11:33, 26 November 2013 (diff | hist) . . (+78)‎ . . N Summary Files Specification for RAREMETAL ‎ (Zhanxw moved page Summary Files Specification for RAREMETAL to Summary Statistics Files Specification for RAREMETAL and rvtests) (current)
• 11:33, 26 November 2013 (diff | hist) . . (0)‎ . . m Summary Statistics Files Specification for RAREMETAL and rvtests ‎ (Zhanxw moved page Summary Files Specification for RAREMETAL to Summary Statistics Files Specification for RAREMETAL and rvtests)
• 20:43, 25 November 2013 (diff | hist) . . (+96)‎ . . RAREMETAL ‎ (Undo revision 9010 by Shuang Feng (talk))
• 00:25, 24 November 2013 (diff | hist) . . (+29)‎ . . Summary Statistics Files Specification for RAREMETAL and rvtests ‎
• 00:24, 24 November 2013 (diff | hist) . . (+132)‎ . . Summary Statistics Files Specification for RAREMETAL and rvtests ‎
• 00:17, 24 November 2013 (diff | hist) . . (+7,748)‎ . . N Summary Statistics Files Specification for RAREMETAL and rvtests ‎ (Created page with "Category:Software RAREMETAL use summary statistics files to perform meta-analysis. These includes (1) score statistics file and (2) covariance file. Both RAREMETALWORKE...")
• 23:38, 23 November 2013 (diff | hist) . . (+96)‎ . . RAREMETAL ‎ (→‎Useful Wiki Pages)
• 23:34, 23 November 2013 (diff | hist) . . (+122)‎ . . RAREMETAL ‎ (→‎Related Programs)
• 11:38, 23 November 2013 (diff | hist) . . (+66)‎ . . CheckVCF.py ‎ (→‎checkVCF.py)
• 01:21, 15 November 2013 (diff | hist) . . (+2,611)‎ . . LASER ‎ (→‎Estimate ancestries of sequence samples)
• 01:20, 15 November 2013 (diff | hist) . . (0)‎ . . N File:LASER paper Figure 2.png ‎ (current)
• 23:34, 14 November 2013 (diff | hist) . . (+207)‎ . . LASER ‎ (→‎Geno file)
• 08:59, 10 October 2013 (diff | hist) . . (+64)‎ . . RAREMETAL Documentation ‎
• 13:52, 9 October 2013 (diff | hist) . . (+45)‎ . . RAREMETAL Documentation ‎ (→‎Summary Statistics)
• 13:50, 9 October 2013 (diff | hist) . . (-59)‎ . . RAREMETAL Documentation ‎ (→‎Prepare Input Files)
• 13:50, 9 October 2013 (diff | hist) . . (+705)‎ . . RAREMETAL Documentation ‎
• 13:09, 29 June 2013 (diff | hist) . . (0)‎ . . QPLOT ‎
• 13:39, 20 June 2013 (diff | hist) . . (-2)‎ . . Xiaowei Zhan ‎
• 13:37, 20 June 2013 (diff | hist) . . (0)‎ . . N File:Tux flying.gif ‎ (current)
• 13:31, 20 June 2013 (diff | hist) . . (+236)‎ . . N Xiaowei Zhan ‎ (Created page with '<span style="line-height: 1.5em;">Xiaowei Zhan is a PhD student in Abecasis lab.</span> Some software he has been working on (click [http://genome.sph.umich.edu/w/index.ph…')
• 15:30, 19 June 2013 (diff | hist) . . (+460)‎ . . QPLOT ‎
• 21:47, 29 May 2013 (diff | hist) . . (+5)‎ . . RAREMETAL Documentation ‎ (→‎List of Studies)
• 21:46, 29 May 2013 (diff | hist) . . (+55)‎ . . RAREMETAL Documentation ‎ (→‎Software User Interface)
• 22:06, 28 May 2013 (diff | hist) . . (+2)‎ . . RAREMETAL Documentation ‎
• 22:05, 28 May 2013 (diff | hist) . . (+225)‎ . . RAREMETAL Documentation ‎
• 23:56, 8 May 2013 (diff | hist) . . (+953)‎ . . N How to use aspera ‎ (Created page with '== Introduction to Aspera == Aspera is a faster download tool than ftp/sftp. If you download large sequencing data (e.g. 1000 Genomes Project data), you should consider use Aspe…') (current)
• 20:55, 31 March 2013 (diff | hist) . . (+13,918)‎ . . N TabAnno ‎ (Created page with '= Introduction = TabAnno is short for "annotation", it is used for annotate variants. Our goal is to provide abundant information for genetic variants promptly. For example, ann…')
• 20:45, 31 March 2013 (diff | hist) . . (+21)‎ . . Main Page ‎
• 20:37, 31 March 2013 (diff | hist) . . (+23)‎ . . Main Page ‎
• 20:35, 31 March 2013 (diff | hist) . . (+27)‎ . . Main Page ‎
• 20:32, 31 March 2013 (diff | hist) . . (-23)‎ . . Main Page ‎
• 20:31, 31 March 2013 (diff | hist) . . (+50)‎ . . N Rare-metal-worker ‎ (Created page with 'http://genome.sph.umich.edu/wiki/Rare-Metal-Worker') (current)
• 20:30, 31 March 2013 (diff | hist) . . (+200)‎ . . Main Page ‎
• 15:23, 27 March 2013 (diff | hist) . . (-1)‎ . . RareMETALS ‎
• 15:23, 27 March 2013 (diff | hist) . . (+107)‎ . . RareMETALS ‎
• 11:39, 27 March 2013 (diff | hist) . . (-40)‎ . . RareMETALS ‎
• 07:42, 27 March 2013 (diff | hist) . . (+49)‎ . . RareMETALS ‎ (→‎Where to download)
• 07:24, 27 March 2013 (diff | hist) . . (+553)‎ . . RareMETALS ‎
• 07:14, 27 March 2013 (diff | hist) . . (-5)‎ . . RareMETALS ‎
• 07:14, 27 March 2013 (diff | hist) . . (+3)‎ . . RareMETALS ‎
• 07:04, 27 March 2013 (diff | hist) . . (+141)‎ . . RareMETALS ‎
• 19:36, 26 March 2013 (diff | hist) . . (+61)‎ . . Main Page ‎ (→‎Sequence Analysis Tools)
• 19:31, 26 March 2013 (diff | hist) . . (0)‎ . . N File:RefFlat hg19.txt.gz ‎ (current)
• 19:30, 26 March 2013 (diff | hist) . . (0)‎ . . N File:RareMETALS 2.4.tar.gz ‎ (current)
• 19:29, 26 March 2013 (diff | hist) . . (+5,408)‎ . . N RareMETALS ‎ (Created page with 'rareMETALS is an R-package for performing single or gene-level tests for detecting rare variant associations. For questions regarding the use of this package, please contact Daji…')
• 21:06, 6 March 2013 (diff | hist) . . (+59)‎ . . N RareMetals ‎ (Created page with 'Documentation of how to perform rare variant meta analysis.') (current)
• 15:21, 4 March 2013 (diff | hist) . . (-1)‎ . . Tutorial: GotCloud ‎ (→‎STEP 3 : Run GotCloud Variant Calling Pipeline)
• 19:49, 2 March 2013 (diff | hist) . . (+23,807)‎ . . N Rvtests ‎ (Created page with ''''Table of Contents''' <!--*generated with [DocToc](http://doctoc.herokuapp.com/)*--> * Introduction * Download * [[#quick-tutorial|Quick Tutori…')
• 16:23, 23 February 2013 (diff | hist) . . (+22)‎ . . CheckVCF.py ‎
• 16:11, 23 February 2013 (diff | hist) . . (+4,011)‎ . . N CheckVCF.py ‎ (Created page with '= checkVCF.py = checkVCF.py is a small tools written in Python script to check input [http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-ve…')
• 16:21, 19 February 2013 (diff | hist) . . (+191)‎ . . LASER ‎ (→‎Geno file)
• 16:01, 19 February 2013 (diff | hist) . . (+2,723)‎ . . N Vcf2geno ‎ (Created page with '= vcf2geno = Convert VCF files to genotype file and site file. == Input File == Vcf2geno takes VCF files. They can be in plain text or GZIP/BGZIP compressed formats. == Outpu…') (current)
• 13:48, 4 February 2013 (diff | hist) . . (+1)‎ . . LASER ‎ (→‎Pileup file)
• 13:46, 4 February 2013 (diff | hist) . . (+394)‎ . . LASER ‎ (→‎Process sequencing file (BAM))
• 13:38, 4 February 2013 (diff | hist) . . (+2)‎ . . LASER ‎ (→‎Workflow)
• 13:36, 4 February 2013 (diff | hist) . . (+1)‎ . . LASER ‎ (→‎Workflow)
• 16:35, 2 February 2013 (diff | hist) . . (+458)‎ . . LASER ‎
• 21:02, 1 February 2013 (diff | hist) . . (+45)‎ . . LASER ‎ (→‎Workflow)
• 20:42, 1 February 2013 (diff | hist) . . (+2)‎ . . LASER ‎
• 20:41, 1 February 2013 (diff | hist) . . (+1)‎ . . LASER ‎
• 20:07, 1 February 2013 (diff | hist) . . (+5)‎ . . LASER ‎ (→‎Obtain LASER)
• 20:00, 1 February 2013 (diff | hist) . . (+158)‎ . . LASER ‎
• 09:01, 1 February 2013 (diff | hist) . . (0)‎ . . File:LASER-DataProcessing.png ‎ (uploaded a new version of "File:LASER-DataProcessing.png") (current)
• 22:21, 30 January 2013 (diff | hist) . . (0)‎ . . m LASER ‎ (moved LASER Manual to LASER: suggested by wcl)
• 22:21, 30 January 2013 (diff | hist) . . (+19)‎ . . N LASER Manual ‎ (moved LASER Manual to LASER: suggested by wcl) (current)
• 22:21, 30 January 2013 (diff | hist) . . (0)‎ . . m Talk:LASER ‎ (moved Talk:LASER Manual to Talk:LASER: suggested by wcl) (current)
• 22:21, 30 January 2013 (diff | hist) . . (+24)‎ . . N Talk:LASER Manual ‎ (moved Talk:LASER Manual to Talk:LASER: suggested by wcl) (current)
• 22:09, 30 January 2013 (diff | hist) . . (+1)‎ . . LASER ‎

(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)