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From Genome Analysis Wiki
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- 00:31, 12 May 2016 (diff | hist) . . (+208) . . Rvtests (current)
- 18:33, 15 July 2015 (diff | hist) . . (-40) . . LiftOver (→Resources) (current)
- 22:37, 24 March 2015 (diff | hist) . . (-254) . . RareMETALS (→A Simple Tutorial for Using the rareMETALS.range function)
- 22:16, 24 March 2015 (diff | hist) . . (+33) . . RareMETALS
- 22:59, 13 January 2015 (diff | hist) . . (+57) . . RvTests (current)
- 22:57, 13 January 2015 (diff | hist) . . (-1,854) . . Rvtests
- 15:43, 12 January 2015 (diff | hist) . . (+7,561) . . Rvtests
- 01:40, 14 October 2014 (diff | hist) . . (+182) . . LiftOver (→Resources)
- 14:53, 12 August 2014 (diff | hist) . . (+3,974) . . N Ancestry (Created page with "= Introduction = Ancestry can infer ancestry using sequence reads in the Principal Component (PC) space. It is suited for targeted/exome sequencing or whole genome sequenci...") (current)
- 10:41, 10 July 2014 (diff | hist) . . (+155) . . LASER (→Introduction)
- 11:12, 14 February 2014 (diff | hist) . . (+262) . . LiftOver (→Resources)
- 18:21, 29 January 2014 (diff | hist) . . (+97) . . RvTests
- 18:11, 29 January 2014 (diff | hist) . . (+6,391) . . N Template:Other uses (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
- 18:11, 29 January 2014 (diff | hist) . . (+6,391) . . N Template:Main (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
- 18:05, 29 January 2014 (diff | hist) . . (+6,391) . . N Template:Documentation/docspace (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
- 18:04, 29 January 2014 (diff | hist) . . (+6,391) . . N Template:Documentation/template page (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
- 18:03, 29 January 2014 (diff | hist) . . (+6,391) . . N Template:Documentation/end box (Created page with "<!-- BANNER ACROSS TOP OF PAGE --> {| id="mp-topbanner" style="width:100%; background:#f9f9f9; margin:1.2em 0 6px 0; border:1px solid #ddd;" | style="width:61%; ...") (current)
- 18:02, 29 January 2014 (diff | hist) . . (+11,288) . . N Template:Pp-meta (Created page with "{{#ifeq:{{#switch:{{lc:{{{type}}}}} |move=<!-- -->{{#ifeq: {{#switch:{{lc:{{{demolevel|undefined}}}}} |semi |autoconfirmed = autoconfirmed |...") (current)
- 18:02, 29 January 2014 (diff | hist) . . (+1,092) . . N Template:Documentation/end box2 (Created page with "<noinclude><div></noinclude><div style="clear: both;"></div><!--So right or left floating items don't stick out of the doc box.--> </div><!--End of green doc box--><!-- Link...") (current)
- 18:01, 29 January 2014 (diff | hist) . . (+3,563) . . N Template:Pp-template (Created page with "<includeonly>{{pp-meta |type={{#switch:{{{demolevel|{{#ifeq:{{PROTECTIONLEVEL:edit}}-{{PROTECTIONLEVEL:move}}|-sysop|move|{{PROTECTIONLEVEL:edit}}}}}}} |semi |autoconfir...") (current)
- 18:01, 29 January 2014 (diff | hist) . . (+1,960) . . N Template:Documentation/start box (Created page with "<!-- Start of green doc box --><div id="template-documentation" class="template-documentation iezoomfix"><!-- Add the heading at the top of the doc box: -->{{#ifeq: {{{hea...") (current)
- 17:56, 29 January 2014 (diff | hist) . . (+641) . . N Template:Documentation/start box2 (Created page with "{{documentation/start box | preload = {{{preload|}}} <!--Allow custom preloads--> | heading = {{{heading|¬}}} <!--Empty but defined means no header--> | heading-style = {...") (current)
- 17:56, 29 January 2014 (diff | hist) . . (+435) . . N Template:Template other (Created page with "{{#switch: <!--If no or empty "demospace" parameter then detect namespace--> {{#if:{{{demospace|}}} | {{lc: {{{demospace}}} }} <!--Use lower case "demospace"--> | {...") (current)
- 17:52, 29 January 2014 (diff | hist) . . (+117) . . N Template:Str left (Created page with "<includeonly>{{ {{{|safesubst:}}}padleft:|{{{2|1}}}|{{{1}}}}}</includeonly><noinclude> {{documentation}} </noinclude>") (current)
- 17:51, 29 January 2014 (diff | hist) . . (+151) . . N Template:Namespace detect (Created page with "{{#invoke:Namespace detect|main}}<noinclude> {{documentation}} <!-- Categories go on the /doc subpage, and interwikis go on Wikidata. --> </noinclude>") (current)
- 17:49, 29 January 2014 (diff | hist) . . (+2,382) . . N Template:Documentation (Created page with "<!-- Automatically add {{template sandbox notice}} when on a /sandbox page. -->{{#ifeq: {{SUBPAGENAME}} | sandbox | <div style="clear: both;"></div>{{template sandbox notice...") (current)
- 17:48, 29 January 2014 (diff | hist) . . (+76) . . N Template:Hatnote (Created page with "<div class="dablink">{{{1}}}</div><noinclude> {{documentation}} </noinclude>") (current)
- 17:47, 29 January 2014 (diff | hist) . . (+1,526) . . N Template:About (Created page with "{{Hatnote|<!-- -->{{#if: {{{1|}}}|<!-- -->This {{namespace detect|main=article|category=category|other=page}} is about {{{1}}}. }}<!-- -->For {{#if:{{{2|}}}|{{{2}}}...") (current)
- 13:27, 26 November 2013 (diff | hist) . . (+108) . . N Talk:RAREMETAL (Created page with "Xiaowei: It's necessary to include a wiki to explain software outputs, especially for people outside of CSG.") (current)
- 13:25, 26 November 2013 (diff | hist) . . (+118) . . RAREMETAL (Undo revision 9044 by Shuang Feng (talk))
- 13:12, 26 November 2013 (diff | hist) . . (+118) . . RAREMETAL (Undo revision 9041 by Shuang Feng (talk))
- 12:35, 26 November 2013 (diff | hist) . . (+119) . . RAREMETAL
- 12:33, 26 November 2013 (diff | hist) . . (+78) . . N Summary Files Specification for RAREMETAL (Zhanxw moved page Summary Files Specification for RAREMETAL to Summary Statistics Files Specification for RAREMETAL and rvtests) (current)
- 12:33, 26 November 2013 (diff | hist) . . (0) . . m Summary Statistics Files Specification for RAREMETAL and rvtests (Zhanxw moved page Summary Files Specification for RAREMETAL to Summary Statistics Files Specification for RAREMETAL and rvtests)
- 21:43, 25 November 2013 (diff | hist) . . (+96) . . RAREMETAL (Undo revision 9010 by Shuang Feng (talk))
- 01:25, 24 November 2013 (diff | hist) . . (+29) . . Summary Statistics Files Specification for RAREMETAL and rvtests
- 01:24, 24 November 2013 (diff | hist) . . (+132) . . Summary Statistics Files Specification for RAREMETAL and rvtests
- 01:17, 24 November 2013 (diff | hist) . . (+7,748) . . N Summary Statistics Files Specification for RAREMETAL and rvtests (Created page with "Category:Software RAREMETAL use summary statistics files to perform meta-analysis. These includes (1) score statistics file and (2) covariance file. Both RAREMETALWORKE...")
- 00:38, 24 November 2013 (diff | hist) . . (+96) . . RAREMETAL (→Useful Wiki Pages)
- 00:34, 24 November 2013 (diff | hist) . . (+122) . . RAREMETAL (→Related Programs)
- 12:38, 23 November 2013 (diff | hist) . . (+66) . . CheckVCF.py (→checkVCF.py)
- 02:21, 15 November 2013 (diff | hist) . . (+2,611) . . LASER (→Estimate ancestries of sequence samples)
- 02:20, 15 November 2013 (diff | hist) . . (0) . . N File:LASER paper Figure 2.png (current)
- 00:34, 15 November 2013 (diff | hist) . . (+207) . . LASER (→Geno file)
- 09:59, 10 October 2013 (diff | hist) . . (+64) . . RAREMETAL Documentation
- 14:52, 9 October 2013 (diff | hist) . . (+45) . . RAREMETAL Documentation (→Summary Statistics)
- 14:50, 9 October 2013 (diff | hist) . . (-59) . . RAREMETAL Documentation (→Prepare Input Files)
- 14:50, 9 October 2013 (diff | hist) . . (+705) . . RAREMETAL Documentation
- 14:09, 29 June 2013 (diff | hist) . . (0) . . QPLOT
- 14:39, 20 June 2013 (diff | hist) . . (-2) . . Xiaowei Zhan
- 14:37, 20 June 2013 (diff | hist) . . (0) . . N File:Tux flying.gif (current)
- 14:31, 20 June 2013 (diff | hist) . . (+236) . . N Xiaowei Zhan (Created page with '<span style="line-height: 1.5em;">Xiaowei Zhan is a PhD student in Abecasis lab.</span> Some software he has been working on (click [http://genome.sph.umich.edu/w/index.ph…')
- 16:30, 19 June 2013 (diff | hist) . . (+460) . . QPLOT
- 22:47, 29 May 2013 (diff | hist) . . (+5) . . RAREMETAL Documentation (→List of Studies)
- 22:46, 29 May 2013 (diff | hist) . . (+55) . . RAREMETAL Documentation (→Software User Interface)
- 23:06, 28 May 2013 (diff | hist) . . (+2) . . RAREMETAL Documentation
- 23:05, 28 May 2013 (diff | hist) . . (+225) . . RAREMETAL Documentation
- 00:56, 9 May 2013 (diff | hist) . . (+953) . . N How to use aspera (Created page with '== Introduction to Aspera == Aspera is a faster download tool than ftp/sftp. If you download large sequencing data (e.g. 1000 Genomes Project data), you should consider use Aspe…') (current)
- 21:55, 31 March 2013 (diff | hist) . . (+13,918) . . N TabAnno (Created page with '= Introduction = TabAnno is short for "annotation", it is used for annotate variants. Our goal is to provide abundant information for genetic variants promptly. For example, ann…')
- 21:45, 31 March 2013 (diff | hist) . . (+21) . . Main Page
- 21:37, 31 March 2013 (diff | hist) . . (+23) . . Main Page
- 21:35, 31 March 2013 (diff | hist) . . (+27) . . Main Page
- 21:32, 31 March 2013 (diff | hist) . . (-23) . . Main Page
- 21:31, 31 March 2013 (diff | hist) . . (+50) . . N Rare-metal-worker (Created page with 'http://genome.sph.umich.edu/wiki/Rare-Metal-Worker') (current)
- 21:30, 31 March 2013 (diff | hist) . . (+200) . . Main Page
- 16:23, 27 March 2013 (diff | hist) . . (-1) . . RareMETALS
- 16:23, 27 March 2013 (diff | hist) . . (+107) . . RareMETALS
- 12:39, 27 March 2013 (diff | hist) . . (-40) . . RareMETALS
- 08:42, 27 March 2013 (diff | hist) . . (+49) . . RareMETALS (→Where to download)
- 08:24, 27 March 2013 (diff | hist) . . (+553) . . RareMETALS
- 08:14, 27 March 2013 (diff | hist) . . (-5) . . RareMETALS
- 08:14, 27 March 2013 (diff | hist) . . (+3) . . RareMETALS
- 08:04, 27 March 2013 (diff | hist) . . (+141) . . RareMETALS
- 20:36, 26 March 2013 (diff | hist) . . (+61) . . Main Page (→Sequence Analysis Tools)
- 20:31, 26 March 2013 (diff | hist) . . (0) . . N File:RefFlat hg19.txt.gz (current)
- 20:30, 26 March 2013 (diff | hist) . . (0) . . N File:RareMETALS 2.4.tar.gz (current)
- 20:29, 26 March 2013 (diff | hist) . . (+5,408) . . N RareMETALS (Created page with 'rareMETALS is an R-package for performing single or gene-level tests for detecting rare variant associations. For questions regarding the use of this package, please contact Daji…')
- 22:06, 6 March 2013 (diff | hist) . . (+59) . . N RareMetals (Created page with 'Documentation of how to perform rare variant meta analysis.') (current)
- 16:21, 4 March 2013 (diff | hist) . . (-1) . . Tutorial: GotCloud (→STEP 3 : Run GotCloud Variant Calling Pipeline)
- 20:49, 2 March 2013 (diff | hist) . . (+23,807) . . N Rvtests (Created page with ''''Table of Contents''' <!--*generated with [DocToc](http://doctoc.herokuapp.com/)*--> * Introduction * Download * [[#quick-tutorial|Quick Tutori…')
- 17:23, 23 February 2013 (diff | hist) . . (+22) . . CheckVCF.py
- 17:11, 23 February 2013 (diff | hist) . . (+4,011) . . N CheckVCF.py (Created page with '= checkVCF.py = checkVCF.py is a small tools written in Python script to check input [http://www.1000genomes.org/wiki/Analysis/Variant%20Call%20Format/vcf-variant-call-format-ve…')
- 17:21, 19 February 2013 (diff | hist) . . (+191) . . LASER (→Geno file)
- 17:01, 19 February 2013 (diff | hist) . . (+2,723) . . N Vcf2geno (Created page with '= vcf2geno = Convert VCF files to genotype file and site file. == Input File == Vcf2geno takes VCF files. They can be in plain text or GZIP/BGZIP compressed formats. == Outpu…') (current)
- 14:48, 4 February 2013 (diff | hist) . . (+1) . . LASER (→Pileup file)
- 14:46, 4 February 2013 (diff | hist) . . (+394) . . LASER (→Process sequencing file (BAM))
- 14:38, 4 February 2013 (diff | hist) . . (+2) . . LASER (→Workflow)
- 14:36, 4 February 2013 (diff | hist) . . (+1) . . LASER (→Workflow)
- 17:35, 2 February 2013 (diff | hist) . . (+458) . . LASER
- 22:02, 1 February 2013 (diff | hist) . . (+45) . . LASER (→Workflow)
- 21:42, 1 February 2013 (diff | hist) . . (+2) . . LASER
- 21:41, 1 February 2013 (diff | hist) . . (+1) . . LASER
- 21:07, 1 February 2013 (diff | hist) . . (+5) . . LASER (→Obtain LASER)
- 21:00, 1 February 2013 (diff | hist) . . (+158) . . LASER
- 10:01, 1 February 2013 (diff | hist) . . (0) . . File:LASER-DataProcessing.png (uploaded a new version of "File:LASER-DataProcessing.png") (current)
- 23:21, 30 January 2013 (diff | hist) . . (0) . . m LASER (moved LASER Manual to LASER: suggested by wcl)
- 23:21, 30 January 2013 (diff | hist) . . (+19) . . N LASER Manual (moved LASER Manual to LASER: suggested by wcl) (current)
- 23:21, 30 January 2013 (diff | hist) . . (0) . . m Talk:LASER (moved Talk:LASER Manual to Talk:LASER: suggested by wcl) (current)
- 23:21, 30 January 2013 (diff | hist) . . (+24) . . N Talk:LASER Manual (moved Talk:LASER Manual to Talk:LASER: suggested by wcl) (current)
- 23:09, 30 January 2013 (diff | hist) . . (+1) . . LASER
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