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Jump to navigationJump to search- 23:09, 30 January 2013 diff hist +151 LASER
- 23:06, 30 January 2013 diff hist +19 LASER
- 22:35, 30 January 2013 diff hist +57 LASER
- 22:34, 30 January 2013 diff hist +37 LASER
- 22:33, 30 January 2013 diff hist -154 LASER
- 22:31, 30 January 2013 diff hist -31,095 LASER
- 22:31, 30 January 2013 diff hist 0 N File:LASER Manual.pdf current
- 21:44, 30 January 2013 diff hist 0 File:LASER-Workflow.png uploaded a new version of "File:LASER-Workflow.png": Reverted to version as of 01:44, 31 January 2013 current
- 21:44, 30 January 2013 diff hist 0 File:LASER-Workflow.png uploaded a new version of "File:LASER-Workflow.png"
- 21:44, 30 January 2013 diff hist 0 File:LASER-Workflow.png uploaded a new version of "File:LASER-Workflow.png"
- 21:43, 30 January 2013 diff hist 0 File:LASER-DataProcessing.png uploaded a new version of "File:LASER-DataProcessing.png"
- 21:36, 30 January 2013 diff hist 0 N File:LASER-DataProcessing.png
- 21:36, 30 January 2013 diff hist 0 N File:LASER-Workflow.png
- 16:35, 8 January 2013 diff hist +33,380 LASER
- 10:58, 11 September 2012 diff hist +4,417 LASER
- 22:58, 29 August 2012 diff hist +106 LASER
- 22:40, 29 August 2012 diff hist +161 N Talk:LASER Created page with 'We will add tips: how to parallel processing to save time, how to prepare reference panel common tricks to avoid - strand flip and/or throw tri-allelic sites'
- 22:37, 29 August 2012 diff hist +964 N LASER Created page with 'LASER Manual LASER is xxxx. To use LASER, please read part1 and part2. Also example will guide you through a complete procedure of how to use laser to infer ancestry. If you ha…'
- 15:06, 5 July 2012 diff hist -5 EPACTS →Join in EPACTS mailing list
- 23:18, 18 June 2012 diff hist +161 LiftMap.py current
- 19:47, 18 June 2012 diff hist -30 LiftOver →Use RsMergeArch and SNPHistory
- 15:08, 7 June 2012 diff hist +166 Exome Chip Design →Cautious Sites
- 22:14, 6 June 2012 diff hist +178 Exome Chip Design →Assay Design Rates
- 22:18, 2 June 2012 diff hist +12 QPLOT
- 10:36, 1 June 2012 diff hist +1,205 QPLOT →Parameters
- 10:27, 1 June 2012 diff hist +45 QPLOT →Command line
- 11:07, 7 March 2012 diff hist +58 Rare variant tests →Summary of rare variant tests for sequence data
- 13:36, 17 February 2012 diff hist +233 QPLOT →Input files
- 13:20, 17 February 2012 diff hist -10 QPLOT →Source Code Distribution
- 11:45, 16 February 2012 diff hist +1 QPLOT →Gallery of examples
- 11:45, 16 February 2012 diff hist +1 QPLOT →Built-in example
- 11:45, 16 February 2012 diff hist -1 QPLOT →Parameters
- 11:42, 16 February 2012 diff hist +8 QPLOT →Input files
- 11:41, 16 February 2012 diff hist 0 QPLOT →Input files
- 11:41, 16 February 2012 diff hist +1 QPLOT →Source Code Distribution
- 11:37, 16 February 2012 diff hist -2 QPLOT →Source Code Distribution
- 11:37, 16 February 2012 diff hist +574 QPLOT →Source Code Distribution
- 16:35, 15 February 2012 diff hist +105 QPLOT →Source Code Distribution
- 16:33, 15 February 2012 diff hist +1,230 QPLOT
- 09:52, 15 February 2012 diff hist -79 QPLOT →Diagnose sequencing quality
- 08:58, 15 February 2012 diff hist +7 QPLOT →Parameters
- 08:57, 15 February 2012 diff hist +351 QPLOT →Parameters
- 16:55, 14 February 2012 diff hist +56 QPLOT →Command line
- 16:52, 14 February 2012 diff hist -1 QPLOT →Introduction
- 16:49, 14 February 2012 diff hist 0 QPLOT →Introduction
- 12:43, 14 February 2012 diff hist +95 QPLOT →Gallery of examples
- 12:40, 14 February 2012 diff hist -6 QPLOT →Gallery of examples
- 12:39, 14 February 2012 diff hist +9 QPLOT →Diagnose sequencing quality
- 12:36, 14 February 2012 diff hist +9 QPLOT →Diagnose sequencing quality
- 12:35, 14 February 2012 diff hist +3 QPLOT →Diagnose sequencing quality
- 12:34, 14 February 2012 diff hist +1 QPLOT →Gallery of examples
- 12:33, 14 February 2012 diff hist -4 QPLOT →Usage
- 12:30, 14 February 2012 diff hist +281 QPLOT →Introduction
- 12:29, 14 February 2012 diff hist +44 QPLOT
- 12:14, 14 February 2012 diff hist +41 m QPLOT →Where to Find It
- 12:13, 14 February 2012 diff hist +398 m QPLOT →Where to Find It
- 12:02, 14 February 2012 diff hist +2 QPLOT →Command line
- 12:02, 14 February 2012 diff hist -8 QPLOT →Example
- 00:08, 14 February 2012 diff hist +1,310 QPLOT →Example
- 00:02, 14 February 2012 diff hist 0 N File:WrongBarCoding.pdf current
- 00:02, 14 February 2012 diff hist 0 N File:WrongBaseQual.pdf current
- 23:46, 13 February 2012 diff hist +2,551 QPLOT
- 23:44, 13 February 2012 diff hist 0 N File:Qplot.Pool.9847.pdf current
- 23:38, 13 February 2012 diff hist 0 N File:Qplot.pdf current
- 23:06, 13 February 2012 diff hist +99 m QPLOT →Output files
- 23:02, 13 February 2012 diff hist +86 QPLOT →Parameters
- 22:56, 13 February 2012 diff hist +5 m QPLOT →Input files
- 20:12, 13 February 2012 diff hist +50 QPLOT →Binary Download
- 20:11, 13 February 2012 diff hist +63 QPLOT →Binary Download
- 20:09, 13 February 2012 diff hist +495 QPLOT →Where to Find It
- 23:09, 16 January 2012 diff hist -169 QPLOT
- 23:08, 16 January 2012 diff hist +3 Template:ToolGitRepo Undo revision 4263 by Zhanxw (Talk)
- 23:07, 16 January 2012 diff hist -3 Template:ToolGitRepo →Downloading From GitHub Without Git
- 16:20, 21 November 2011 diff hist +194 Talk:QPLOT current
- 15:06, 31 October 2011 diff hist +8 UMAKE →Common Problems
- 15:05, 31 October 2011 diff hist +652 UMAKE →Software Components
- 16:27, 27 September 2011 diff hist -26 LiftOver
- 23:39, 23 September 2011 diff hist +3 LiftOver
- 23:37, 23 September 2011 diff hist +489 LiftOver
- 13:53, 29 August 2011 diff hist +5 Talk:QPLOT
- 13:53, 29 August 2011 diff hist +2,525 N Talk:QPLOT Created page with 'Qplot process each aligned bam files. (1) Empirical vs reported Phred score: Conditioning on the reported base quality, we count the total time of bases that matches or not match…'
- 11:34, 10 August 2011 diff hist +29 LiftOver →Resources
- 11:34, 10 August 2011 diff hist +3,973 N LiftMap.py Created page with '<source lang="python"> #!/usr/bin/python import sys, os def usage(): print("%s -m old.map -p old.ped -d old.dat -o new.prefix" % sys.argv[0] ) print("lift old.map (optio…'
- 11:33, 10 August 2011 diff hist -21 LiftRsNumber.py current
- 11:31, 10 August 2011 diff hist +1,833 N LiftRsNumber.py Created page with '<syntaxhighlight lang="python"> #!/usr/bin/python import sys, os def usage(): print("%s file: lift over rs number. " % sys.argv[0] ) print("file should look like:") …'
- 11:24, 10 August 2011 diff hist +123 LiftOver
- 11:23, 10 August 2011 diff hist +4,853 LiftOver
- 11:17, 10 August 2011 diff hist +4 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 11:17, 10 August 2011 diff hist +3 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 11:16, 10 August 2011 diff hist +117 Minimac: 1000 Genomes Imputation Cookbook →Your Own Data
- 11:49, 9 August 2011 diff hist +4,316 LiftOver
- 17:11, 8 August 2011 diff hist +4,351 N LiftOver Created page with 'LiftOver LiftOver is a necesary step to bring all genetical analysis back to the same reference build. Particularly, our current data are mainly in either NCBI build 36 (UCSC h…'
- 10:04, 12 July 2011 diff hist +155 UMAKE →Exercise with Example Resources
- 10:24, 29 June 2011 diff hist +243 Introduction to new students →Unix
- 22:03, 29 September 2010 diff hist +200 Tramp →Where to get it
- 04:35, 27 August 2010 diff hist +50 BaseQualityCheck current
- 17:33, 15 July 2010 diff hist +1,194 N Introduction to new students Created page with 'Introduction to New Students * R/C++/perl/python code snipplets / toy examples of various packages [[https://statgen.sph.umich.edu/wiki/Category:Code_Samples Internal Resources…'
- 01:14, 13 May 2010 diff hist +393 Karma →Optional flags
- 00:00, 13 May 2010 diff hist 0 BaseQualityCheck
- 00:00, 13 May 2010 diff hist +163 BaseQualityCheck
- 23:01, 11 May 2010 diff hist +87 BaseQualityCheck
- 22:59, 11 May 2010 diff hist +355 BaseQualityCheck
- 22:50, 11 May 2010 diff hist +279 BaseQualityCheck
- 22:42, 11 May 2010 diff hist +8 BaseQualityCheck
- 22:40, 11 May 2010 diff hist +1,324 N BaseQualityCheck Created page with ''''Base Quality Check (May 11, 2010 - Paul, Xiaowei)''' '''Location''': $(repository)/baseQualityCheck/baseQualityCheck '''Algorithm''': It read SAM/BAM file line by line; th…'
- 22:31, 11 May 2010 diff hist +132 Software →Read Mapping
- 22:17, 13 April 2010 diff hist -1 Karma
- 22:17, 13 April 2010 diff hist +117 Karma
- 22:14, 13 April 2010 diff hist +450 Karma
- 16:49, 12 April 2010 diff hist +537 Karma
- 17:36, 30 March 2010 diff hist -75 Karma
- 18:07, 29 March 2010 diff hist +131 Karma
- 13:53, 24 March 2010 diff hist +34 Karma
- 09:07, 24 March 2010 diff hist +353 Karma
- 23:53, 23 March 2010 diff hist +308 Karma
- 23:52, 23 March 2010 diff hist +496 Karma
- 18:51, 22 March 2010 diff hist 0 File:2009.08 Group Retreat Photo.jpg uploaded a new version of "File:2009.08 Group Retreat Photo.jpg" current
- 18:35, 22 March 2010 diff hist +84 Karma
- 16:32, 22 March 2010 diff hist +204 Karma
- 03:21, 18 February 2010 diff hist +2 Mapping Quality Scores →Calculating a Mapping Quality Score current
- 20:12, 16 February 2010 diff hist +14 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 11:52, 16 February 2010 diff hist +9 Evaluating a Read Mapper on Simulated Data →Bulk statistics result
- 15:52, 11 February 2010 diff hist +113 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 15:50, 11 February 2010 diff hist +28 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 15:49, 11 February 2010 diff hist +2,758 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 05:15, 10 February 2010 diff hist +81 Evaluating a Read Mapper on Simulated Data →Bulk statistics result
- 05:12, 10 February 2010 diff hist +172 Evaluating a Read Mapper on Simulated Data →Bulk statistics result
- 05:10, 10 February 2010 diff hist +12 Evaluating a Read Mapper on Simulated Data →Bulk statistics result
- 05:09, 10 February 2010 diff hist +53 Evaluating a Read Mapper on Simulated Data
- 05:08, 10 February 2010 diff hist +1,527 Evaluating a Read Mapper on Simulated Data
- 18:33, 8 February 2010 diff hist +4 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 18:33, 8 February 2010 diff hist +269 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 14:48, 8 February 2010 diff hist +807 Evaluating a Read Mapper on Simulated Data →Available Test Datasets
- 23:54, 27 January 2010 diff hist -1 Karma-colorspace current
- 20:24, 21 January 2010 diff hist +1 Biostatistics 666: Linkage Disequilibrium
- 20:23, 21 January 2010 diff hist +4 Biostatistics 666: Linkage Disequilibrium
- 20:23, 21 January 2010 diff hist +78 Biostatistics 666: Linkage Disequilibrium
- 00:39, 15 January 2010 diff hist -1 An example of using libcsg current
- 00:38, 15 January 2010 diff hist +114 An example of using libcsg
- 00:37, 15 January 2010 diff hist +261 An example of using libcsg
- 00:33, 15 January 2010 diff hist +11 An example of using libcsg
- 19:15, 14 January 2010 diff hist +282 An example of using libcsg
- 19:01, 14 January 2010 diff hist +123 N Talk:FastQValidator Created page with 'Some intro on using libcsg code: [http://genome.sph.umich.edu/wiki/An_example_of_using_libcsg An example of using libcsg]'
- 18:57, 14 January 2010 diff hist +4,157 N An example of using libcsg Created page with 'Here I showed an example using Goncalo's library (I assume he agreed me to do so).<br> The purpose of this program is (1) to extract a range of text from a input file, and count…'
- 18:12, 14 January 2010 diff hist +122 FastQValidator
- 18:09, 14 January 2010 diff hist +386 FastQValidator
- 13:35, 18 December 2009 diff hist +118 Mapping Quality Scores
- 07:08, 15 November 2009 diff hist +23 Karma-colorspace
- 07:07, 15 November 2009 diff hist -34 Karma-colorspace
- 07:04, 15 November 2009 diff hist -13 Karma-colorspace
- 07:02, 15 November 2009 diff hist -12 Karma-colorspace
- 07:01, 15 November 2009 diff hist +32 Karma-colorspace
- 06:59, 15 November 2009 diff hist +150 Karma-colorspace
- 06:56, 15 November 2009 diff hist +131 Karma-colorspace
- 06:55, 15 November 2009 diff hist -33 Karma-colorspace
- 06:54, 15 November 2009 diff hist +16 Karma-colorspace
- 06:52, 15 November 2009 diff hist -12 Karma-colorspace
- 06:49, 15 November 2009 diff hist +5 Karma-colorspace
- 06:48, 15 November 2009 diff hist -5 Karma-colorspace
- 06:43, 15 November 2009 diff hist -3 Karma-colorspace
- 06:42, 15 November 2009 diff hist +14 Karma-colorspace
- 06:38, 15 November 2009 diff hist +19 Karma-colorspace
- 06:35, 15 November 2009 diff hist -1,294 Karma-colorspace
- 17:48, 13 November 2009 diff hist -28 Main Page →What Is Available
- 17:46, 13 November 2009 diff hist +115 Main Page
- 17:43, 13 November 2009 diff hist +7,505 N Karma-colorspace Created page with '= Overview = KARMA(K-tuple Alignment with Rapid Matching Algorithm) is able to map 35bp single end color space reads at the speed of approximately $1.2-2.0 \times 10^9$ reads pe…'