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1. 1000 Genomes Project Pilot 1 SNP Calling
2. 830 - BasicMapper::main()
3. 830 - BestAlignment::ClearPositions()
4. 830 - BestAlignment::EvaluateAlignment() (detailed comparison)
5. 830 - BestAlignment::EvaluateAlignment() (main loop)
6. 830 - BestAlignment::IterateCache()
7. 830 - BestAlignment::MaqAlignment()
8. 830 - BestAlignment::isNewPosition()
9. 830 - Haplotyper::ConditionOnData()
10. 830 - Haplotyper::ImputeGenotypes()
11. 830 - Haplotyper::ImputeGenotypes() (edge)
12. 830 - Haplotyper::ImputeGenotypes() (internal)
13. 830 - Haplotyper::RandomSetup()
14. 830 - Haplotyper::SampleChromosomes()
15. 830 - Haplotyper::SampleHaplotypes()
16. 830 - Haplotyper::SampleOneHaplotype()
17. 830 - Haplotyper::ScoreLeftConditional()
18. 830 - Haplotyper::ScoreLeftConditional() (smart, complicated)
19. 830 - Haplotyper::SetupPrior()
20. 830 - Haplotyper::SummarizeOptions()
21. 830 - Haplotyper::Transpose()
22. 830 - MINIMAC::main()
23. 830 - MaqIndex::BuildIndex()
24. 830 - MaqIndex::CompareToIndex()
25. 830 - MaqIndex::GetWord()
26. 830 - MaqIndex::LookupWord()
27. 830 - MarkovModel::Condition()
28. 830 - MarkovModel::CountErrors()
29. 830 - MarkovModel::CountErrorsAndRecombinants()
30. 830 - MarkovModel::CountRecombinants()
31. 830 - MarkovModel::Impute()
32. 830 - MarkovModel::Transpose()
33. 830 - MarkovModel::WalkLeft()
34. 830 - MarkovModel::WalkRight()
35. Abecasis Group Awards
36. An example of using libcsg
37. Ancestry
38. Ann Arbor Travel Basics
39. BAFRegress
40. BAM Review Action Items
41. BamPileup
42. Bam read count
43. BaseQualityCheck
44. Base Caller Summaries
45. Basic Linux Intro
46. Bayesdenovo
47. Better X Sessions from Home (NX)
48. Biostatistics 602: Main Page
49. Biostatistics 666: Advanced Coalescent, Changing Population Size
50. Biostatistics 666: Advanced Coalescent, Computation with the Coalescent

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