Uploads by Goncalo
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Date | Name | Thumbnail | Size | Description | Versions |
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16:08, 6 December 2013 | Question Sheet - Jun et al (2012) American Journal of Human Genetics.pdf (file) | 82 KB | 1 | ||
13:29, 4 December 2013 | Question Sheet - Wu et al (2011) American Journal of Human Genetics.pdf (file) | 81 KB | 1 | ||
16:01, 25 November 2013 | Question Sheet - Li and Durbin (2011) Nature.pdf (file) | 129 KB | 1 | ||
04:00, 7 November 2013 | Question Sheet - Zerbino and Birney (2008) Bioinformatics.pdf (file) | 77 KB | Removed unnecessary second page. | 2 | |
03:58, 7 November 2013 | Question Sheet - Li and Durbin (2009) Bioinformatics.pdf (file) | 126 KB | Fixed typos in code example. | 2 | |
05:10, 11 October 2013 | Question Sheet - Li et al (2008) Genome Research.pdf (file) | 101 KB | 1 | ||
14:33, 25 September 2013 | Question Sheet - Li et al (2010) Gen Epid.pdf (file) | 80 KB | 1 | ||
14:32, 25 September 2013 | Question Sheet - Howie et al (2012) Nat Genet.pdf (file) | 77 KB | 1 | ||
14:29, 25 September 2013 | Question Sheet - Browing and Browning (2012) Am J Hum Genet.pdf (file) | 83 KB | 1 | ||
12:07, 2 August 2013 | 2013.07 - Overton Award Final.pdf (file) | 6.86 MB | 1 | ||
15:20, 12 June 2013 | Scott Vrieze.jpg (file) | 45 KB | 1 | ||
15:20, 9 January 2013 | Sample-manhattan-plot-B.png (file) | 9 KB | 1 | ||
15:20, 9 January 2013 | Sample-manhattan-plot-A.png (file) | 7 KB | 1 | ||
15:19, 9 January 2013 | Sample-manhattan-plot.png (file) | 49 KB | 1 | ||
09:19, 5 December 2012 | 666.24.pdf (file) | 124 KB | Minor tweaks | 2 | |
05:22, 3 December 2012 | 666.20.pdf (file) | 509 KB | This version adds a tiny bit more detail on the use of empirical kinship coefficients. | 5 | |
04:43, 3 December 2012 | 666.2012.01.pdf (file) | 505 KB | Added discussion of Lander Waterman results on contig lengths. | 2 | |
14:58, 28 November 2012 | 666.2011.01.pdf (file) | 841 KB | Typo fixes. | 4 | |
02:07, 21 November 2012 | 666.2011.02.pdf (file) | 689 KB | Minor update; added empirical distribution of read pair distances from QPLOT | 3 | |
02:06, 21 November 2012 | 666.2010.05.pdf (file) | 503 KB | Minor typo fixes | 3 | |
00:32, 14 November 2012 | 666.2010.04.pdf (file) | 1.24 MB | Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing. | 3 | |
06:33, 12 November 2012 | 666.2010.03.pdf (file) | 1.01 MB | Adds a summary slide. | 5 | |
03:33, 31 October 2012 | 666.17.pdf (file) | 208 KB | 5 | ||
03:33, 31 October 2012 | 666.16.pdf (file) | 941 KB | Minor typo fix. | 6 | |
05:24, 22 October 2012 | 666.2010.02.pdf (file) | 405 KB | Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long. | 4 | |
06:16, 3 October 2012 | 666.12.pdf (file) | 224 KB | Minor edits. | 5 | |
02:25, 26 September 2012 | 666.10.pdf (file) | 103 KB | Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters. | 3 | |
23:05, 18 September 2012 | 666.06.pdf (file) | 779 KB | 4 | ||
08:40, 10 September 2012 | 666.03.pdf (file) | 997 KB | Minor updates. | 6 | |
02:15, 5 September 2012 | 2011.666.01.pdf (file) | 824 KB | Yet more minor edits, this time listing potential group projects. | 3 | |
16:40, 31 October 2011 | Pval-qq-sample.png (file) | 28 KB | Sample QQ Plot | 1 | |
09:41, 10 October 2011 | 2011.09 - Exome Chip.pdf (file) | 531 KB | Summary of exome chip design process and content. | 1 | |
08:35, 28 September 2011 | 666.04.pdf (file) | 230 KB | Minor typo corrections. | 4 | |
08:34, 28 September 2011 | 666.05.pdf (file) | 210 KB | Added frequency spectrum from 12,000 individuals. | 2 | |
21:02, 2 December 2010 | 666.Zollner.CNV.pdf (file) | 893 KB | Guest lecture by Sebastian Zollner on Copy Number Variation. | 1 | |
11:07, 9 November 2010 | 666.2010.01.pdf (file) | 1.49 MB | Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version ** | 2 | |
04:27, 26 October 2010 | 666.13.pdf (file) | 707 KB | Added a summary slide at the beginning. | 3 | |
03:53, 7 October 2010 | 666.11.pdf (file) | 466 KB | Minor typos fixed. | 2 | |
01:51, 5 October 2010 | 666.09.pdf (file) | 344 KB | Fixes several typos. | 4 | |
01:51, 5 October 2010 | 666.09.Master.pdf (file) | 347 KB | Minor clarification of different uses of N. | 2 | |
02:24, 14 September 2010 | 666.02.pdf (file) | 1.22 MB | 3 | ||
05:46, 7 September 2010 | 666.01.pdf (file) | 242 KB | Biostatistics 666 Introductory Lecture as of 2010/09/07 | 2 | |
09:10, 22 July 2010 | QQ-plot-problem.png (file) | 46 KB | QQ plot for a problematic study; from McCarthy et al (2008). | 1 | |
09:09, 22 July 2010 | QQ-plot-ideal.png (file) | 42 KB | QQ plot for an ideal study; from McCarthy et al (2008). | 1 | |
09:09, 22 July 2010 | QQ-plot-null.png (file) | 37 KB | QQ plot for a null study; from McCarthy et al (2008). | 1 | |
10:06, 20 April 2010 | 666.21.pdf (file) | 1.89 MB | 2 | ||
00:09, 14 April 2010 | LocusZoomSmall.png (file) | 47 KB | 1 | ||
00:54, 8 April 2010 | 666.19.pdf (file) | 1.24 MB | 3 | ||
00:50, 1 April 2010 | 666.18.pdf (file) | 736 KB | Introduces the Lander-Green algorithm. | 1 | |
07:09, 23 March 2010 | 666.15.pdf (file) | 1.02 MB | Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint. | 1 |