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(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)- 02:07, 21 November 2012 Goncalo talk contribs uploaded a new version of File:666.2011.02.pdf (Minor update; added empirical distribution of read pair distances from QPLOT)
- 02:06, 21 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.05.pdf (Minor typo fixes)
- 00:32, 14 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.04.pdf (Minor updates, adding Ion Torrent as a sequencing technology and adding some specific numbers to illustrate the scale of genetic variation that can be reached by sequencing.)
- 06:33, 12 November 2012 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Adds a summary slide.)
- 03:33, 31 October 2012 Goncalo talk contribs uploaded a new version of File:666.17.pdf
- 03:33, 31 October 2012 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Minor typo fix.)
- 03:07, 29 October 2012 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Fixed look of slides with equations.)
- 05:24, 22 October 2012 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Updated lecture to include example from an actual affected sibling pair study. The lecture is still far too long.)
- 06:16, 3 October 2012 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor edits.)
- 02:25, 26 September 2012 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Minor tweaks. Now explicitly mentions use of the E-M algorithm to estimate subpopulations and their frequencies or for calling genotype clusters.)
- 23:05, 18 September 2012 Goncalo talk contribs uploaded a new version of File:666.06.pdf
- 08:40, 10 September 2012 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates.)
- 02:16, 5 September 2012 Goncalo talk contribs deleted page File:2011.666.01.pdf (Deleted old revision 20120905060704!2011.666.01.pdf)
- 02:15, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Yet more minor edits, this time listing potential group projects.)
- 02:07, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf (Minor update for 2012, adding more detail to HWE discussion, link to online class notes, and potential discussion of grading scheme)
- 02:02, 5 September 2012 Goncalo talk contribs uploaded a new version of File:2011.666.01.pdf
- 01:07, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 6 (Delete old solutions before start of new term!)
- 01:06, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 5 (Delete old solutions before start of new term!)
- 01:06, 5 September 2012 Goncalo talk contribs restored page Biostatistics 666: Main Page (85 revisions restored: Fixing accidental deletion.)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page Biostatistics 666: Main Page (Delete old solutions before start of new term!)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 4 (Delete old solutions before start of new term!)
- 01:05, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 3 (Delete old solutions before start of new term!)
- 01:04, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 2 (Delete old solutions before start of new term!)
- 01:04, 5 September 2012 Goncalo talk contribs deleted page 666 Problem Set 1 (Delete old solutions before start of new term!)
- 15:55, 1 June 2012 User account Michael talk contribs was created by Goncalo talk contribs
- 15:49, 1 June 2012 Goncalo talk contribs deleted page Qplot.0.01 (content was: ' download qplot.0.01.tar.gz' (and the only contributor was 'Bingshan'))
- 15:43, 1 June 2012 Goncalo talk contribs deleted page Inbreeding Coefficient (content was: 'Inbreeding Coefficient Estimates from Genotype Likelihoods' (and the only contributor was 'Atks'))
- 04:49, 7 December 2011 Goncalo talk contribs uploaded File:666.24.pdf (Introduction to likelihood calculations in large pedigrees and the Elston Stewart algorithm.)
- 04:20, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.01.pdf (Corrected small typos.)
- 04:19, 7 December 2011 Goncalo talk contribs uploaded a new version of File:666.2011.02.pdf (Corrected small typos.)
- 09:13, 5 December 2011 Goncalo talk contribs uploaded File:666.2011.02.pdf (Copy Number Variation Analysis Using Sequence Data)
- 07:43, 30 November 2011 Goncalo talk contribs uploaded File:666.2011.01.pdf (Introduction to Rare Variant Burden Tests and Related Issues. )
- 05:59, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.05.pdf (Added Sardinia example and discussion of consensus genotype calling.)
- 04:25, 28 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Fixes several small typos in worked imputation examples.)
- 07:49, 23 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.04.pdf (Updates to introduce base quality, mapping quality and base alignment quality.)
- 06:55, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Minor updates to figures.)
- 06:54, 21 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf (Minor cosmetic updates.)
- 07:17, 16 November 2011 Goncalo talk contribs deleted page File:666.20.pdf (Deleted old revision 20111116111732!666.20.pdf: duplicate)
- 07:17, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf (This version removes page numbers (a visual nuisance) and adds a mention of approaches that use empirical, rather than pedigree based, kinship coefficients.)
- 07:15, 16 November 2011 Goncalo talk contribs uploaded a new version of File:666.20.pdf
- 08:01, 9 November 2011 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Fixed typos, added example of age-related macular degeneration linkage study.)
- 05:12, 7 November 2011 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Simplified lecture to make it fit more easily into one hour.)
- 16:40, 31 October 2011 Goncalo talk contribs uploaded File:Pval-qq-sample.png (Sample QQ Plot)
- 10:09, 28 October 2011 User account Clement Ma talk contribs was created by Goncalo talk contribs
- 09:44, 28 October 2011 Goncalo talk contribs restored page 666 Problem Set 3 (8 revisions restored)
- 09:43, 28 October 2011 Goncalo talk contribs restored page 666 Problem Set 2 (39 revisions restored)
- 02:22, 24 October 2011 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Added ACE gene example)
- 09:41, 10 October 2011 Goncalo talk contribs uploaded File:2011.09 - Exome Chip.pdf (Summary of exome chip design process and content.)
- 17:08, 7 October 2011 Goncalo talk contribs restored page 666 Problem Set 1 (67 revisions restored)
- 06:05, 3 October 2011 Goncalo talk contribs uploaded a new version of File:666.06.pdf (Minor updates to the lecture, including: * Explicit formulae for Tajima's D (very complicated!) * More extended discussion of the impact of population size on the coalescent)
- 08:35, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typo corrections.)
- 08:34, 28 September 2011 Goncalo talk contribs uploaded a new version of File:666.05.pdf (Added frequency spectrum from 12,000 individuals.)
- 02:29, 21 September 2011 Goncalo talk contribs deleted page Basic instructions (content was: 'This site is powered by MediaWiki. Consult the [http://meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.<br><br> =…' (and the only contributor was 'Goncalo'))
- 02:25, 21 September 2011 Goncalo talk contribs deleted page Math Test (content was: '<math>\alpha^2+\beta^2=1</math>' (and the only contributor was 'Dharknes'))
- 04:12, 19 September 2011 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Minor updates to the lecture - added recommended reading list, synchronized content with 2011 lecture series)
- 07:26, 12 September 2011 Goncalo talk contribs uploaded File:2011.666.01.pdf (Course Introduction and Hardy Weinberg Lecture Combined into A Single Class)
- 05:48, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 6 (Problem Set Obsolete)
- 05:47, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 5 (Problem Set Obsolete)
- 05:47, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 4 (Problem Set Obsolete)
- 05:46, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 3 (Problem Set Obsolete)
- 05:46, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 2 (Problem Set Obsolete)
- 05:45, 12 September 2011 Goncalo talk contribs deleted page 666 Problem Set 1 (Problem Set Obsolete)
- 03:02, 28 July 2011 Goncalo talk contribs moved page 1000G Cookbook to Minimac: 1000 Genomes Imputation Cookbook (Switched to more informative title)
- 07:48, 10 June 2011 User account Feng Zhang talk contribs was created by Goncalo talk contribs
- 21:02, 2 December 2010 Goncalo talk contribs uploaded File:666.Zollner.CNV.pdf (Guest lecture by Sebastian Zollner on Copy Number Variation.)
- 10:42, 2 December 2010 Goncalo talk contribs blocked Maivang2811 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 10:42, 2 December 2010 Goncalo talk contribs deleted page User:Maivang2811 (Vandalism: content was: '[http://www.johnconnorsmd.com/ atlanta plastic surgery] [http://www.johnconnorsmd.com/ Atlanta Plastic surgeons]' (and the only contributor was 'Maivang2811'))
- 23:39, 1 December 2010 Goncalo talk contribs uploaded File:666.2010.05.pdf
- 16:08, 29 November 2010 Goncalo talk contribs blocked Xukaxuka2811 talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 16:07, 29 November 2010 Goncalo talk contribs deleted page User:Xukaxuka2811 (spam)
- 15:55, 29 November 2010 Goncalo talk contribs uploaded File:666.2010.04.pdf (Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.)
- 19:10, 24 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf
- 07:21, 23 November 2010 Goncalo talk contribs moved page Talk:Examples to Talk:Examples of Read Mapping with Karma and BWA
- 07:21, 23 November 2010 Goncalo talk contribs moved page Examples to Examples of Read Mapping with Karma and BWA
- 07:14, 23 November 2010 Goncalo talk contribs uploaded File:666.2010.03.pdf (Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.)
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Mktrost from (none) to administrator
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Mflick from administrator to administrator and bureaucrat
- 13:32, 18 November 2010 Goncalo talk contribs changed group membership for Pha from (none) to administrator and bureaucrat
- 03:47, 18 November 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor refinements to axis.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Fixes minor errors.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Updated version of lecture with more detailed review of ASP analysis)
- 02:59, 11 November 2010 Goncalo talk contribs uploaded File:666.2010.02.pdf (Lecture describing Risch's MLS and Holman's Possible Triangle. )
- 11:07, 9 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.01.pdf (Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version **)
- 06:19, 9 November 2010 Goncalo talk contribs uploaded File:666.2010.01.pdf
- 08:10, 6 November 2010 Goncalo talk contribs deleted page User talk:Abnehmen (spam)
- 08:10, 6 November 2010 Goncalo talk contribs blocked Abnehmen talk contribs with an expiration time of indefinite (account creation disabled, email disabled) (Spamming links to external sites)
- 10:23, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Fixed a small typo. Compared to original version, this one also includes slightly more informative titles.)
- 08:14, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Minor update to include kinship coefficients.)
- 04:27, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Added a summary slide at the beginning. )
- 04:18, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Updated lecture to include QQ plots, brief mention of principal component analysis.)
- 11:38, 15 October 2010 Goncalo talk contribs restored page 666 Problem Set 4 (58 revisions restored)
- 11:38, 15 October 2010 Goncalo talk contribs restored page 666 Problem Set 3 (8 revisions restored)
- 19:01, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Typo fixes.)
- 07:58, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor update.)
- 05:00, 12 October 2010 Goncalo talk contribs deleted page Mach2dat: analyze case-control data with MACH output (content before blanking was: '== Association with MACH output == After you have performed the imputation, you can directly use MACH output to assess association for quantitative and qualitative traits in unrelated. You will need a *.ped and *.dat f…')
- 03:53, 7 October 2010 Goncalo talk contribs uploaded a new version of File:666.11.pdf (Minor typos fixed.)
- 03:53, 7 October 2010 Goncalo talk contribs deleted page File:666.10 - E-M algorithm.ppt
- 03:53, 7 October 2010 Goncalo talk contribs uploaded File:666.10 - E-M algorithm.ppt
- 01:55, 7 October 2010 Goncalo talk contribs deleted page Zeroo (content was: 'link=http://www.bonaveri.ru|bonaveri link=http://www.fivetv.ru|fivetv File:Vik.jpg|link=http://www.hvacguru.ru|hvacgur…' (and the only contributor was 'Bololoikak2'))