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(newest | oldest) View (newer 100 | older 100) (20 | 50 | 100 | 250 | 500)- 02:48, 18 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture4-presentation.pdf
- 02:48, 18 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture4-nup.pdf
- 07:00, 13 January 2011 Hmkang talk contribs uploaded a new version of File:Biostat615-homework1.pdf
- 02:04, 13 January 2011 Hmkang talk contribs uploaded File:Biostat615-homework1.pdf
- 18:15, 12 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture3.pdf
- 18:15, 12 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture3-nup.pdf
- 17:47, 10 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture2-presentation.pdf
- 17:47, 10 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture2-handout-nup.pdf
- 20:53, 5 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture1-presentation.pdf
- 20:50, 5 January 2011 Hmkang talk contribs uploaded File:Biostat615-lecture1-handout.pdf
- 21:02, 2 December 2010 Goncalo talk contribs uploaded File:666.Zollner.CNV.pdf (Guest lecture by Sebastian Zollner on Copy Number Variation.)
- 23:39, 1 December 2010 Goncalo talk contribs uploaded File:666.2010.05.pdf
- 15:55, 29 November 2010 Goncalo talk contribs uploaded File:666.2010.04.pdf (Basic introduction to some of the issues and opportunities posed by whole genome sequence studies.)
- 19:10, 24 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.03.pdf
- 07:14, 23 November 2010 Goncalo talk contribs uploaded File:666.2010.03.pdf (Introduction to Genotype Imputation, describes imputation in families and later in samples of unrelated individuals.)
- 03:47, 18 November 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf (Minor refinements to axis.)
- 14:32, 17 November 2010 Mktrost talk contribs uploaded a new version of File:StatGen.0.1.2.tgz (Quick fix to update the usage for fastqValidator)
- 14:24, 17 November 2010 Mktrost talk contribs uploaded a new version of File:StatGen.0.1.2.tgz
- 14:20, 17 November 2010 Mktrost talk contribs uploaded File:StatGen.0.1.2.tgz
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.02.pdf (Fixes minor errors.)
- 08:59, 16 November 2010 Goncalo talk contribs uploaded a new version of File:666.16.pdf (Updated version of lecture with more detailed review of ASP analysis)
- 02:59, 11 November 2010 Goncalo talk contribs uploaded File:666.2010.02.pdf (Lecture describing Risch's MLS and Holman's Possible Triangle. )
- 13:00, 9 November 2010 Mktrost talk contribs uploaded File:StatGen.0.1.1.tgz
- 11:07, 9 November 2010 Goncalo talk contribs uploaded a new version of File:666.2010.01.pdf (Lecture on power calculation for genomewide association studies. Also introduces the idea of two stage genomewide association studies. ** Lots of typos fixed in this version **)
- 06:19, 9 November 2010 Goncalo talk contribs uploaded File:666.2010.01.pdf
- 14:12, 8 November 2010 Mktrost talk contribs uploaded File:TrostASHG2010.pdf
- 02:13, 2 November 2010 Mktrost talk contribs uploaded File:StatGen.0.1.0.tgz
- 01:59, 2 November 2010 Mktrost talk contribs uploaded File:StatGen 0.1.0.tgz
- 10:23, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Fixed a small typo. Compared to original version, this one also includes slightly more informative titles.)
- 08:14, 28 October 2010 Goncalo talk contribs uploaded a new version of File:666.20.pdf (Minor update to include kinship coefficients.)
- 04:27, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Added a summary slide at the beginning. )
- 04:18, 26 October 2010 Goncalo talk contribs uploaded a new version of File:666.13.pdf (Updated lecture to include QQ plots, brief mention of principal component analysis.)
- 15:09, 18 October 2010 Cfuchsb talk contribs uploaded File:ASHG 2010 Poster Fabio 101410.ppt
- 19:01, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Typo fixes.)
- 07:58, 12 October 2010 Goncalo talk contribs uploaded a new version of File:666.12.pdf (Minor update.)
- 03:53, 7 October 2010 Goncalo talk contribs uploaded a new version of File:666.11.pdf (Minor typos fixed.)
- 03:53, 7 October 2010 Goncalo talk contribs uploaded File:666.10 - E-M algorithm.ppt
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixes several typos.)
- 01:51, 5 October 2010 Goncalo talk contribs uploaded a new version of File:666.09.Master.pdf (Minor clarification of different uses of N.)
- 16:37, 3 October 2010 Remator3 talk contribs uploaded File:Zepp21.jpg (Led Zeppelin)
- 08:28, 30 September 2010 Goncalo talk contribs uploaded File:666.09.Master.pdf (Lecturer's slides for lecture on allele frequency estimation. Include solutions to in class exercises.)
- 08:44, 28 September 2010 Goncalo talk contribs uploaded a new version of File:666.06.pdf
- 01:50, 21 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Minor typos fixed.)
- 23:33, 15 September 2010 Goncalo talk contribs uploaded a new version of File:666.04.pdf (Introductory lecture on the coalescent. This version fixes some minor typos.)
- 02:25, 14 September 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf
- 02:24, 14 September 2010 Goncalo talk contribs uploaded a new version of File:666.02.pdf
- 22:34, 8 September 2010 Goncalo talk contribs uploaded a new version of File:666.02.pdf
- 05:46, 7 September 2010 Goncalo talk contribs uploaded a new version of File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/09/07)
- 12:34, 7 August 2010 EmmaWatson23 talk contribs uploaded File:EmmaWatson23.JPG
- 11:23, 22 July 2010 Mktrost talk contribs uploaded File:Bam.0.0.2.tgz (BAM Validator Initial Release)
- 11:17, 22 July 2010 Mktrost talk contribs uploaded a new version of File:Bam.0.0.2.tar.gz
- 11:16, 22 July 2010 Mktrost talk contribs uploaded a new version of File:Bam.0.0.2.tar.gz (BAM Validator Initial Release)
- 10:59, 22 July 2010 Mktrost talk contribs uploaded File:Bam.0.0.2.tar.gz (BAM Validator Initial Release)
- 10:17, 22 July 2010 Mktrost talk contribs uploaded a new version of File:Bam 0.0.2.tar
- 09:46, 22 July 2010 Mktrost talk contribs uploaded File:Bam 0.0.2.tar (BAM Validator Initial Release)
- 09:37, 22 July 2010 Mktrost talk contribs uploaded a new version of File:Bam.gz
- 09:33, 22 July 2010 Mktrost talk contribs uploaded File:Bam.gz (BAM Validator Initial Release)
- 09:10, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-problem.png (QQ plot for a problematic study; from McCarthy et al (2008).)
- 09:09, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-ideal.png (QQ plot for an ideal study; from McCarthy et al (2008).)
- 09:09, 22 July 2010 Goncalo talk contribs uploaded File:QQ-plot-null.png (QQ plot for a null study; from McCarthy et al (2008).)
- 07:45, 24 June 2010 Ylwtx talk contribs uploaded File:Figure3.pdf
- 15:49, 17 June 2010 AssaSom talk contribs uploaded File:12345.JPG
- 14:53, 24 May 2010 Welchr talk contribs uploaded File:FADS1 small.png
- 14:46, 24 May 2010 Welchr talk contribs uploaded File:FADS1 locus.png
- 10:14, 19 May 2010 Yancylo talk contribs uploaded File:Scatterplot.png
- 11:49, 30 April 2010 Cfuchsb talk contribs uploaded File:Cat Surprised.jpg
- 10:06, 20 April 2010 Goncalo talk contribs uploaded a new version of File:666.21.pdf
- 08:38, 20 April 2010 Goncalo talk contribs uploaded File:666.21.pdf
- 00:09, 14 April 2010 Goncalo talk contribs uploaded File:LocusZoomSmall.png
- 00:54, 8 April 2010 Goncalo talk contribs uploaded a new version of File:666.19.pdf
- 00:54, 8 April 2010 Goncalo talk contribs uploaded File:666.20.pdf
- 03:55, 6 April 2010 Goncalo talk contribs uploaded a new version of File:666.19.pdf
- 02:43, 6 April 2010 Goncalo talk contribs uploaded File:666.19.pdf (Non-parametric linkage analysis, parametric linkage analysis, information content calculations.)
- 00:50, 1 April 2010 Goncalo talk contribs uploaded File:666.18.pdf (Introduces the Lander-Green algorithm.)
- 00:35, 1 April 2010 Goncalo talk contribs uploaded a new version of File:666.17.pdf
- 05:56, 30 March 2010 Goncalo talk contribs uploaded File:666.17.pdf (Describes approaches for multipoint analysis in different relative pairs. Describes approaches for checking genetic relationships. )
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.16.pdf (Introduces multipoint analysis, in the context of sibling pairs.)
- 07:09, 23 March 2010 Goncalo talk contribs uploaded File:666.15.pdf (Shows how a simple disease model can be used to predict IBD probabilities for relative pairs. Introduces possible triangle constraint.)
- 18:51, 22 March 2010 Zhanxw talk contribs uploaded a new version of File:2009.08 Group Retreat Photo.jpg
- 07:17, 18 March 2010 Goncalo talk contribs uploaded File:666.14.pdf
- 12:45, 9 March 2010 Ljbaker talk contribs uploaded File:GoncaloAbecasis.jpg
- 02:56, 22 February 2010 Goncalo talk contribs uploaded File:666.13.pdf (Introduces the problem of population stratification in the context of an association study. Discusses three possible solutions: a) Family based association tests. b) The genomic control method. c) Genotype based matching approaches. )
- 08:15, 18 February 2010 Goncalo talk contribs uploaded File:666.12.pdf (Introduces Haplotype Association Tests.)
- 22:59, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.10.pdf (Introduction to E-M Algorithm in Genetics. This version fixes reference to Excoffier and Slatkin paper. )
- 22:58, 15 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed reference to Excoffier paper.)
- 22:53, 15 February 2010 Goncalo talk contribs uploaded File:666.11.pdf (Haplotyping Algorithms. February 16, 2010)
- 09:46, 11 February 2010 Goncalo talk contribs uploaded File:666.10.pdf
- 01:17, 11 February 2010 Goncalo talk contribs uploaded File:666.08.pdf (Advanced guest lecture by Sebastian Zoellner. Focused on computation methods related to the coalescent. February 4, 2010.)
- 01:16, 11 February 2010 Goncalo talk contribs uploaded File:666.07.pdf (Advanced lecture on the coalescent by guest lecturer, Sebastian Zoellner. Focused on coalescent modeling with changing population sizes. February 2, 2009.)
- 12:01, 9 February 2010 Goncalo talk contribs uploaded a new version of File:666.09.pdf (Fixed minor typos. February 9, 2010)
- 04:49, 9 February 2010 Goncalo talk contribs uploaded File:666.09.pdf (This lecture reviews maximum likelihood estimation and applies maximum likelihood concepts to derive estimates of allele frequency in several simple settings. Last update February 9, 2010.)
- 04:23, 28 January 2010 Goncalo talk contribs uploaded File:666.06.pdf (Coalescent with Recombination or Migration January 26, 2010)
- 02:15, 26 January 2010 Goncalo talk contribs uploaded File:666.05.pdf (This lecture covers three concepts: * Estimating theta using sequence data as input. * Modeling frequency spectra using simulations * Analytically modeling the distribution of total variant count January 26, 2010)
- 09:37, 21 January 2010 Goncalo talk contribs uploaded File:666.04.pdf (Introduction to the Coalescent. January 21, 2010)
- 04:23, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Introduction to Linkage Disequilibrium. Further tweaks as of January 19, 2010. The lecture is presently too long and should be split into two.)
- 03:13, 19 January 2010 Goncalo talk contribs uploaded a new version of File:666.03.pdf (Updated Lecture Notes, as of January 19, 2010.)
- 08:44, 14 January 2010 Goncalo talk contribs uploaded File:666.03.pdf (Introduces Measures of Linkage Disequibrium and Related Concepts Last updated January 14, 2010)
- 02:43, 12 January 2010 Goncalo talk contribs uploaded File:666.02.pdf (Lecture on Hardy Weinberg Equilibrium January 12, 2009)
- 00:26, 7 January 2010 Goncalo talk contribs uploaded File:666.01.pdf (Biostatistics 666 Introductory Lecture as of 2010/01/06.)
- 01:32, 14 November 2009 Goncalo talk contribs uploaded File:2009.08 Group Retreat Photo.jpg (Photo from Group Retreat in August 2008.)