Long pages
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- (hist) Vt [83,191 bytes]
- (hist) Tutorial: GotCloud UW CMG [47,591 bytes]
- (hist) LocusZoom Standalone [46,553 bytes]
- (hist) Make file tutorial [44,577 bytes]
- (hist) EPACTS [41,972 bytes]
- (hist) Biostatistics 615/815 Winter 2011 [37,034 bytes]
- (hist) Rvtests [29,722 bytes]
- (hist) Tutorial: GotCloud [25,601 bytes]
- (hist) SeqShop: Variant Calling and Filtering for INDELs Practical, December 2014 [24,562 bytes]
- (hist) RAREMETAL Documentation [24,426 bytes]
- (hist) EPACTS for DIAGRAM [24,397 bytes]
- (hist) SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 [22,949 bytes]
- (hist) SeqShop: Variant Calling and Filtering for INDELs Practical, May 2015 [22,623 bytes]
- (hist) SeqShop: Genetic Association Analysis Practical, December 2014 [21,679 bytes]
- (hist) Exome Chip Design [21,182 bytes]
- (hist) SeqShop: Analysis of Structural Variation Practical, December 2014 [21,097 bytes]
- (hist) SeqShop: Association Analysis, May 2015 [20,716 bytes]
- (hist) GotCloud: Alignment Sub-Pipelines [20,619 bytes]
- (hist) VerifyBamID [20,374 bytes]
- (hist) SeqShop: Analysis of Structural Variation Practical, May 2015 [20,191 bytes]
- (hist) SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 [20,035 bytes]
- (hist) SeqShop: Genetic Association Analysis Practical, June 2014 [19,884 bytes]
- (hist) SeqShop: Variant Calling and Filtering for SNPs Practical, December 2014 [19,882 bytes]
- (hist) Code Sample: Generating Manhattan Plots in R [19,872 bytes]
- (hist) Minimac: 1000 Genomes Imputation Cookbook [19,820 bytes]
- (hist) METAL Documentation [19,274 bytes]
- (hist) LibStatGen: ASP [19,239 bytes]
- (hist) Goncalo Abecasis: Interview with Christiana Fogg [19,031 bytes]
- (hist) SeqShop: Variant Calling and Filtering for SNPs Practical, May 2015 [18,988 bytes]
- (hist) RAREMETALWORKER [18,801 bytes]
- (hist) BamUtil: stats [18,759 bytes]
- (hist) METAL Quick Start [18,743 bytes]
- (hist) GotCloud: Variant Calling Options [18,674 bytes]
- (hist) GotCloud: Versions [18,528 bytes]
- (hist) Tutorial: Low Pass Sequence Analysis [18,303 bytes]
- (hist) LibStatGen: VCF [18,261 bytes]
- (hist) SeqShop: Calling Your Own Genome, December 2014 [18,145 bytes]
- (hist) RareMETALS [17,976 bytes]
- (hist) SeqShop: Analysis of Structural Variation Practical, June 2014 [17,382 bytes]
- (hist) BamUtil [17,053 bytes]
- (hist) SeqShop: Sequence Mapping and Assembly Practical, December 2014 [17,024 bytes]
- (hist) SeqShop: Sequence Mapping and Assembly Practical, June 2014 [16,675 bytes]
- (hist) Minimac [16,428 bytes]
- (hist) SeqShop: Sequence Mapping and Assembly Practical, May 2015 [16,322 bytes]
- (hist) UMAKE [16,020 bytes]
- (hist) QPLOT [15,919 bytes]
- (hist) TrioCaller [15,816 bytes]
- (hist) GotCloud: Binary Releases [15,596 bytes]
- (hist) Using Git Example [15,268 bytes]
- (hist) Variant Normalization [15,102 bytes]
- (hist) Variant classification [14,937 bytes]
- (hist) LocusZoom [14,897 bytes]
- (hist) Sequencing Workshop Analysis of Indels [14,678 bytes]
- (hist) EMADS Primary Analysis Plan [14,621 bytes]
- (hist) StarCluster [14,547 bytes]
- (hist) LiftOver [14,512 bytes]
- (hist) VcfCodingSnps [14,342 bytes]
- (hist) TabAnno [13,891 bytes]
- (hist) GotCloud: GenomeSTRiP Pipeline [13,841 bytes]
- (hist) Karma [13,824 bytes]
- (hist) Minimac2 [13,793 bytes]
- (hist) Polymutt [13,762 bytes]
- (hist) SeqShop: Calling Your Own Genome, May 2015 [13,683 bytes]
- (hist) RareMETALS2 [13,497 bytes]
- (hist) IMPUTE2: 1000 Genomes Imputation Cookbook [13,439 bytes]
- (hist) BamUtil: recab [13,115 bytes]
- (hist) GotCloud: Alignment Pipeline [12,941 bytes]
- (hist) MaCH FAQ [12,923 bytes]
- (hist) BamUtil: bam2FastQ [12,860 bytes]
- (hist) SAM [12,664 bytes]
- (hist) LASER [12,335 bytes]
- (hist) GotCloud: FAQs [12,317 bytes]
- (hist) SardiNIA [12,256 bytes]
- (hist) SAM/BAM Convert Sequence [12,164 bytes]
- (hist) 830 - MINIMAC::main() [12,007 bytes]
- (hist) BamUtil: diff [11,697 bytes]
- (hist) SeqShop: Aligning Your Own Genome, June 2014 [11,675 bytes]
- (hist) Creating an AMI on EC2 [11,514 bytes]
- (hist) FastQValidator [11,473 bytes]
- (hist) BamUtil: clipOverlap [11,334 bytes]
- (hist) Examples of Read Mapping with Karma and BWA [11,316 bytes]
- (hist) SAM Validation Criteria [11,292 bytes]
- (hist) C++ Library: libStatGen [11,231 bytes]
- (hist) Sam Library Usage Examples [11,119 bytes]
- (hist) Generic Exome Analysis Plan [11,009 bytes]
- (hist) Relationship between Ploidy, Alleles and Genotypes [10,905 bytes]
- (hist) Biostatistics 615/815 Fall 2011 [10,863 bytes]
- (hist) LibStatGen Download [10,708 bytes]
- (hist) SeqShop: Estimates of Genetic Ancestry Practical, December 2014 [10,434 bytes]
- (hist) RAREMETALWORKER command reference [10,079 bytes]
- (hist) Git FAQs [10,033 bytes]
- (hist) Minimac3 ChangeLog [9,990 bytes]
- (hist) SeqShop: Estimates of Genetic Ancestry Practical, June 2014 [9,981 bytes]
- (hist) BAM Review Action Items [9,939 bytes]
- (hist) BamUtil: filter [9,889 bytes]
- (hist) GotCloud: Creating a New Pipeline [9,770 bytes]
- (hist) VcfCooker [9,700 bytes]
- (hist) MEAGA [9,305 bytes]
- (hist) Minimac3 Usage [9,218 bytes]
- (hist) Analyses of Indels [9,176 bytes]
- (hist) Biostatistics 602: Main Page [9,083 bytes]
- (hist) BamUtil: dedup [9,059 bytes]
- (hist) Code Sample: Generating QQ Plots in R [9,023 bytes]
- (hist) Biostatistics 866: Main Page [8,966 bytes]
- (hist) GREGOR [8,786 bytes]
- (hist) Tandem Repeat Concepts [8,696 bytes]
- (hist) SeqShop: Estimates of Genetic Ancestry Practical, May 2015 [8,622 bytes]
- (hist) GotCloud: Variant Calling Pipeline [8,558 bytes]
- (hist) RAREMETAL Change Log [8,544 bytes]
- (hist) GotCloud: Genetic Reference and Resource Files [8,541 bytes]
- (hist) GotCloud [8,528 bytes]
- (hist) Biostatistics 830: Fall 2013 Edition [8,505 bytes]
- (hist) Biostatistics 615/815: Main Page [8,494 bytes]
- (hist) Minimac4 [8,492 bytes]
- (hist) GLF [8,319 bytes]
- (hist) Triodenovo [8,293 bytes]
- (hist) DosageConvertor [8,125 bytes]
- (hist) Summary Statistics Files Specification for RAREMETAL and rvtests [7,974 bytes]
- (hist) EMADS [7,895 bytes]
- (hist) Minimac3 Info File [7,826 bytes]
- (hist) Minimac4 Documentation [7,817 bytes]
- (hist) Minimac4 - Full List of Options [7,698 bytes]
- (hist) MutationFilter [7,697 bytes]
- (hist) Abecasis Lab [7,633 bytes]
- (hist) MaCH: Input Files [7,624 bytes]
- (hist) BamUtil: validate [7,543 bytes]
- (hist) BAFRegress [7,492 bytes]
- (hist) Biostatistics 830: Main Page [7,367 bytes]
- (hist) Test EPACTS for DIAGRAM [7,365 bytes]
- (hist) Minimac: Tutorial [7,357 bytes]
- (hist) Famrvtest [7,338 bytes]
- (hist) Biostatistics 666: Main Page [7,303 bytes]
- (hist) PileupBasedVariantCalling [7,294 bytes]
- (hist) Bar Harbor Statistical Genetics Workshop [7,218 bytes]
- (hist) BamUtil: trimBam [7,211 bytes]
- (hist) Tutorial: RAREMETAL [7,185 bytes]
- (hist) Karma-colorspace [7,165 bytes]
- (hist) 1000 Genomes Project Pilot 1 SNP Calling [7,158 bytes]
- (hist) Minimac3 [7,147 bytes]
- (hist) Understanding VerifyBamID output [6,980 bytes]
- (hist) Variant Call Pipeline [6,909 bytes]
- (hist) EMMAX [6,887 bytes]
- (hist) Genezoom [6,873 bytes]
- (hist) ExomePicks [6,843 bytes]
- (hist) RAREMETAL FAQ [6,819 bytes]
- (hist) BamUtil: polishBam [6,775 bytes]
- (hist) Rare variant tests [6,767 bytes]
- (hist) GTDT [6,661 bytes]
- (hist) Base Caller Summaries [6,473 bytes]
- (hist) M3vcftools Usage [6,472 bytes]
- (hist) Amazon Storage [6,462 bytes]
- (hist) Bayesdenovo [6,453 bytes]
- (hist) Minimac3 Info (Older Version) [6,431 bytes]
- (hist) RAREMETAL METHOD [6,333 bytes]
- (hist) BamUtil: squeeze [6,177 bytes]
- (hist) SeqShop: Aligning Your Own Genome, December 2014 [6,175 bytes]
- (hist) RelativeFinder [6,175 bytes]
- (hist) Minimac3 - Full List of Options [6,159 bytes]
- (hist) Installing MinGW & MSYS on Windows [6,107 bytes]
- (hist) RAREMETALWORKER METHOD [5,949 bytes]
- (hist) SeqShop: Aligning Your Own Genome, May 2015 [5,922 bytes]
- (hist) Minimac3 Imputation Cookbook [5,905 bytes]
- (hist) Tutorial: Low Pass Sequence Analysis Answers [5,822 bytes]
- (hist) BamUtil: writeRegion [5,807 bytes]
- (hist) VICES [5,784 bytes]
- (hist) M3VCF Files [5,766 bytes]
- (hist) Sequence Analysis Practice 2011/03/09 [5,675 bytes]
- (hist) GotCloud: Amazon Demo [5,646 bytes]
- (hist) MaCH: 1000 Genomes Imputation Cookbook [5,646 bytes]
- (hist) Using Gotcloud on Flux [5,632 bytes]
- (hist) C++ Class: CigarRoller [5,541 bytes]
- (hist) BamUtil: dumpAsp [5,510 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, December 2014 [5,460 bytes]
- (hist) C++ Library: general Change Log [5,357 bytes]
- (hist) Minimac3 Examples [5,298 bytes]
- (hist) BamUtil: convert [5,265 bytes]
- (hist) BamUtil: gapInfo [5,230 bytes]
- (hist) Minimac3 Cookbook : Chromosome X Imputation [5,141 bytes]
- (hist) Understanding vcf-summary output [5,050 bytes]
- (hist) Vmatch [4,975 bytes]
- (hist) CigarRoller Proposed Update [4,960 bytes]
- (hist) CalcMatch [4,883 bytes]
- (hist) An example of using libcsg [4,824 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, May 2015 [4,819 bytes]
- (hist) Meta Analysis of SNPxEnvironment Interaction [4,679 bytes]
- (hist) Garlic [4,629 bytes]
- (hist) SeqShop: Calling Your Own Genome, June 2014 [4,618 bytes]
- (hist) StatsTools [4,596 bytes]
- (hist) GotCloud: Filters [4,563 bytes]
- (hist) Verifying Sample Identities - Implementation [4,546 bytes]
- (hist) RvTests [4,498 bytes]
- (hist) SardiNIA project meeting July 15-16, 2013 [4,443 bytes]
- (hist) Arf [4,318 bytes]
- (hist) Better X Sessions from Home (NX) [4,258 bytes]
- (hist) GotCloud: Source Releases [4,253 bytes]
- (hist) Polymutt2 [4,231 bytes]
- (hist) BamUtil: indelDiscordance [4,231 bytes]
- (hist) C++ Class: SamFile [4,217 bytes]
- (hist) Biostatistics 815 Term Project [4,204 bytes]
- (hist) BamUtil: asp [4,184 bytes]
- (hist) LiftMap.py [4,134 bytes]
- (hist) CheckVCF.py [4,096 bytes]
- (hist) Regions of high linkage disequilibrium (LD) [4,095 bytes]
- (hist) Bam read count [4,083 bytes]
- (hist) Amazon Single Node [4,078 bytes]
- (hist) Amazon Snapshot [4,077 bytes]
- (hist) Thunder [4,073 bytes]
- (hist) GBR60vc.conf [4,052 bytes]
- (hist) Minimac Command Reference [4,022 bytes]
- (hist) Ancestry [3,974 bytes]
- (hist) BamUtil: FAQ [3,933 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 2 [3,906 bytes]
- (hist) LibStatGen: BAM [3,857 bytes]
- (hist) Haploxt [3,849 bytes]
- (hist) C++ Class: FastQFile [3,837 bytes]
- (hist) Debuggers [3,820 bytes]
- (hist) Minimac3 Cookbook : Pre-Phasing [3,739 bytes]
- (hist) GlfTrio [3,739 bytes]
- (hist) GlfMultiples [3,724 bytes]
- (hist) SAM: Filtering Reads [3,662 bytes]
- (hist) GotCloud: RedHat Package [3,633 bytes]
- (hist) SplitPed [3,614 bytes]
- (hist) BamUtil: mergeBam [3,601 bytes]
- (hist) M3vcftools [3,571 bytes]
- (hist) FastQ Validation Criteria [3,548 bytes]
- (hist) RAREFY DOCUMENTATION [3,545 bytes]
- (hist) BamGenotypeCheck [3,529 bytes]
- (hist) Biostatistics 501: Main Page [3,495 bytes]
- (hist) Software [3,495 bytes]
- (hist) RAREFY COMMAND [3,494 bytes]
- (hist) SeqShop: December 2014 [3,406 bytes]
- (hist) FamLDCaller [3,270 bytes]
- (hist) SNP Call Set Properties [3,258 bytes]
- (hist) MappabilityScores [3,236 bytes]
- (hist) SeqShop: May 2015 [3,209 bytes]
- (hist) BamUtil: revert [3,158 bytes]
- (hist) Tutorial: EMMAX GotCloud STOM: Lecture 6 [3,130 bytes]
- (hist) Mount S3 Volume [3,106 bytes]
- (hist) ChunkChromosome [3,106 bytes]
- (hist) UMAKE-glfSingle [3,105 bytes]
- (hist) GotCloud: Configuration [3,096 bytes]
- (hist) GlfSingle [3,005 bytes]
- (hist) Pileup [2,975 bytes]
- (hist) LibStatGen Troubleshooting [2,966 bytes]
- (hist) TinySimulator [2,957 bytes]
- (hist) RAREMETALWORKER SPECIAL TOPICS [2,950 bytes]
- (hist) Creating a Snapshot on EC2 [2,944 bytes]
- (hist) Genotype Likelihood based Allele Frequency [2,912 bytes]
- (hist) New Fugue [2,898 bytes]
- (hist) SeqShop: Ancestry On Your Own Genome, June 2014 [2,879 bytes]