2,004
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchRAREMETALWORKER command reference (view source)
Revision as of 13:22, 14 April 2014
, 13:22, 14 April 2014→Kinship Options
==Kinship Options==
==Kinship Options==
===--kinMaf===
===--kinMaf===
* --kinMaf takes a value that specifies the MAF cutoff for variants to be used to estimate GRMs.
* The default is 0.05, which means variants with MAF<0.05 are not used for estimating GRMs.
===--kinMiss===
===--kinMiss===
* --kinMiss takes a value that specifies the missing genotype cutoff for variants to be used to estimate GRMs.
* The default is 0.05, which means variants with genotype call rate <0.95 are not used for estimating GRMs.
==Chromosome X==
==Chromosome X==
