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Revision as of 13:47, 14 April 2014
, 13:47, 14 April 2014→Analyzing Chromosome X
== Analyzing Chromosome X==
== Analyzing Chromosome X==
* To make sure RAREMETALWORKER analyze chromosome X correctly, '''male has to be code as 1 and female has to be coded as 2''' in [[RAREMETALWORKER#PED_and_DAT_Files | '''PED''']] file.
* --xStart and --xEnd options described the start and end position of nonPAR region on chromosome X. The default values are 2699520 and 154931044, according to Human Genome build 19.
* --xStart and --xEnd options described the start and end position of nonPAR region on chromosome X. The default values are 2699520 and 154931044, according to Human Genome build 19.
* When samples are analyzed as unrelated (no any kind of kinship is used for linear mixed model approach), no special actions needed for analyzing markers on chromosome X.
* When samples are analyzed as unrelated (no any kind of kinship is used for linear mixed model approach), no special actions needed for analyzing markers on chromosome X.
