Changes

   3      121414217      121414217      C      A      .      .      ALT_AF=0.0747833;

   3      121414217      121414217      C      A      .      .      ALT_AF=0.0747833;

===Annotation===

===Annotation===

* RAREMETAL automatically recognizes the annotation format generated by [[ANNO | '''ANNO''']] or [[EPACTS#Annotating_VCF_file_using_EPACTS | '''EPACTS''']].

* RAREMETAL automatically recognizes the annotation format generated by [[TabAnno | '''ANNO''']] or [[EPACTS#Annotating_VCF_file_using_EPACTS | '''EPACTS''']].

* To annotate a the VCF generated in previous step, you can use the following command:

* To annotate a the VCF generated in previous step, you can use the following command:

  ./anno --in your.in.vcf.gz --out your.out.vcf.gz

  ./anno --in your.in.vcf.gz --out your.out.vcf.gz