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Famrvtest (view source)

Revision as of 14:15, 20 August 2014

579 bytes removed ,  14:15, 20 August 2014
→‎Group Info from Annotated VCF File
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   PLEKHN1 1:901922_G/A    1:901923_C/A    1:902088_G/A    1:902128_C/T    1:902133_C/G    1:902176_C/T    1:905669_C/G         
 
   PLEKHN1 1:901922_G/A    1:901923_C/A    1:902088_G/A    1:902128_C/T    1:902133_C/G    1:902176_C/T    1:905669_C/G         
 
   HES4    1:934735_A/C    1:934770_G/A    1:934801_C/T    1:935085_G/A    1:935089_C/G
 
   HES4    1:934735_A/C    1:934770_G/A    1:934801_C/T    1:935085_G/A    1:935089_C/G
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===Group Info from Annotated VCF File===
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If --groupFile option is '''NOT''' specified, ''''famrvtest''' will look for an annotated vcf file as blue print for variants to group. Users are also allowed to generate a vcf file based on the superset of variants from pooled samples, and annotate outside RAREMETAL. Then, annotated vcf file can be used as input for RAREMETAL for gene-level meta-analysis, or group files can be generated based on the annotated vcf file. Detailed description of these options are [[Rare-Metal#Group_Rare_Variants_from_Annotated_VCF|'''available''']].
      
== Example Command Line ==
 
== Example Command Line ==
Shuang Feng
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