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, 11:33, 5 September 2014
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| = Definitions = | | = Definitions = |
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− | The definition of a variant is based on the definition of each allele with respect to the reference sequence. We consider 5 major types as follows. | + | The definition of a variant is based on the definition of each allele with respect to the reference sequence. We consider 5 major types loosely defined as follows. |
| | | |
| ;1. SNP | | ;1. SNP |
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| : b. The removal of a subsequence of the longer sequence would reduce the longer sequence to the smaller sequence. | | : b. The removal of a subsequence of the longer sequence would reduce the longer sequence to the smaller sequence. |
| ;4. CLUMPED | | ;4. CLUMPED |
− | : | + | : a. A clumping of nearby SNPs, MNPs or Indels. |
| ;5. SV | | ;5. SV |
| : The alternate sequence is represented by a angled bracket tag. | | : The alternate sequence is represented by a angled bracket tag. |