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VcfCodingSnps (view source)

Revision as of 14:01, 20 November 2009

350 bytes added ,  14:01, 20 November 2009
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   vcfCodingSnps -s chrom1-CHB.vcf -g genelist.txt -o annotated-chrom1-CHB.vcf
 
   vcfCodingSnps -s chrom1-CHB.vcf -g genelist.txt -o annotated-chrom1-CHB.vcf
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== Command Line Options ==
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  -s ''SNP file''                    Specifies the name of the input [[VCF]]-format SNP file
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  -g ''genefile''                    Specifies the name of the gene file, by default use gene list file generated by UCSC genome browser
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  -o ''output file''                Specifies the name of the output VCF-format SNP file
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