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Let's look at the <code>indel</code> directory:
 
Let's look at the <code>indel</code> directory:
 
  ls ${OUT}/indel
 
  ls ${OUT}/indel
 +
* You should see 3 directories: <code>aux final indelvcf</code>
 +
** aux & indelvcf are intermediate directories
 +
** final contains the final indel output
    
Let's look at the <code>indel/final</code> directory:
 
Let's look at the <code>indel/final</code> directory:

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