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Revision as of 15:14, 6 December 2014
, 15:14, 6 December 2014→Comparison with other data sets
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${GC}/bin/vt profile_indels -g ${OUT}/indel.reference.txt -r ${SS}/ref22/human.g1k.v37.chr22.fa ${OUT}/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS"
${GC}/bin/vt profile_indels -g ${SS}/ref22/indel.reference.txt -r ${SS}/ref22/human.g1k.v37.chr22.fa ${OUT}/indel/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS"
* When running outside the workshop, use ${OUT}/indel.reference.txt instead of ${SS}/ref22/indel.reference.txt
data set
data set
