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SeqShop: Ancestry On Your Own Genome, December 2014 (view source)

Revision as of 22:17, 10 December 2014

283 bytes removed ,  22:17, 10 December 2014
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== Setup ==
 
== Setup ==
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''If you were sequenced, set these values:''
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Resume screen:
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  export SAMPLE=Sample*
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  screen -r
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source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
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source /net/seqshop-server/home/chaolong/LASER-Tutorial/setup.txt
     −
''If you were not sequenced, set these values:''
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Source the LASER setup:
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export SAMPLE=NA12878
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source /net/seqshop-server/home/mktrost/seqshop/setupSS.txt
   
  source /net/seqshop-server/home/chaolong/LASER-Tutorial/setup.txt
 
  source /net/seqshop-server/home/chaolong/LASER-Tutorial/setup.txt
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(SAMPLE & OUT were previously set in your screen session.
    
After setting this, also do
 
After setting this, also do
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== Restarting SNP Call on your own Genome ==
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== Return to Calling your own Genome ==
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Go to [[SeqShop: Calling Your Own Genome, December 2014#Restart_SnpCall|SeqShop: Calling Your Own Genome]] so we can rerun SNP calling overnight.
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Go to [[SeqShop: Calling Your Own Genome, December 2014]] and pick up where we left off.
Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/12345"

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