3,045
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to search→Release of just BamUtil (does not include libStatGen)
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
* [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014
'''BamUtil.1.0.13 Release Notes'''
* BamUtil Version 1.0.13 - Released 2/20/2015
** https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.13]]
** Makefule Updates
*** Improve logic to determine actual path for the library
*** Update to append to USER_COMPILE_VARS even if specified on the command line
** Update [[BamUtil: writeRegion|writeRegion]]
*** Add option to specify readnames to keep in a file
*** Fixed bug that if a read overlapped 2 BED positions, it was printed twice
** Update to [[BamUtil: bam2FastQ|bam2FastQ]]
*** Update to skip non-primary reads
** Update to [[BamUtil: polishBam|polishBam]]
*** Update to handle '\t' string inputs and to add CO option
*** Fix MD5sum calculation to convert fasta to uppercase prior to calculating
'''BamUtil.1.0.12 Release Notes'''
'''Older Releases'''
* [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014
* [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz]] - Released 5/14/2014
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]]
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]]
** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]]
** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]]
*** Also accept ',' instead of just ';' as the delimiter in the input tags string.
*** Also accept ',' instead of just ';' as the delimiter in the input tags string.
* [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014
* [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz]] - Released 2/28/2014
