From Genome Analysis Wiki
Jump to navigationJump to search
55 bytes added
, 02:13, 9 March 2015
Line 9: |
Line 9: |
| | | |
| Options: | | Options: |
− | Input Files : --ped [], --dat [], --vcf [], --dosage, --noeof | + | Input Files : --ped [], --dat [], --vcf [], --dosage, --flagDosage [DS], |
| + | --noeof |
| Output Files : --prefix [], --LDwindow [1000000], --zip, --thin, | | Output Files : --prefix [], --LDwindow [1000000], --zip, --thin, |
| --labelHits | | --labelHits |
Line 21: |
Line 22: |
| --maleLabel [1], --femaleLabel [2] | | --maleLabel [1], --femaleLabel [2] |
| others : --cpu [1], --kinOnly, | | others : --cpu [1], --kinOnly, |
− | --geneMap [../data/refFlat_hg19.txt] | + | --geneMap [../data/refFlat_hg19.txt], --mergedVCFID |
| PhoneHome : --noPhoneHome, --phoneHomeThinning [100] | | PhoneHome : --noPhoneHome, --phoneHomeThinning [100] |
| | | |