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VcfCodingSnps

46 bytes added, 14:14, 14 May 2010
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5'UTR=A26C2[-] means the SNP is in the 5'UTR region of gene A26C2 with a minus strand.
INTRONIC=POTEG[-] means the SNP is in the intronic region of gene POTEG with a minus strand.
SYNONYMOUS_CODING=GAB4BARD1(uc002veu.2):Ala15826157AlaHis506His[-] means the SNP is synonymous coding at position 15826157 the 506th codon in gene GAB4 BARD1 with a minus strand and it keeps amino-acid Ala His unchanged. NON_SYNONYMOUS_CODING=GAB4BARD1(uc002veu.2):Leu15830952ProArg658Cys[-] means the SNP is non_synonymous coding at position 15830925 the 658th codon in gene GAB4 BARD1 (ucsc gene name uc002veu.2)with a minus strand and it changes amino-acid Leu from Arg to ProCys.
SPLICE_SITE=NCAPH2[+] means the SNP is in the SPLICE_SITE (5 bp within exon start or end positions in the coding region) of gene MCAPH2 with a plus strand.
STOP_GAINED=MAPK12:Trp49035685stop[-] means the SNP is at position 49035685 in gene MAPK12 with a minus strand and it changes amino-acid Trp to a stop codon.
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