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The annotating result will be added to the entry "INFO" of the input VCF SNP file and outputted together with other information. If a SNP is annotated differently with respect to different genes (or different isoforms of the same gene), all the annotated results will be added into the entry "INFO". If the SNP is NOT in any gene coding region, then the original "INFO" will be outputted. Here is an example of input and output VCF file headlines:
The annotating result will be added to the entry "INFO" of the input VCF SNP file and outputted together with other information. If a SNP is annotated differently with respect to different genes (or different isoforms of the same gene), all the annotated results will be added into the entry "INFO". If the SNP is NOT in any gene coding region, then the original "INFO" will be outputted. Here is an example of input and output VCF file headlines:
Input VCF headlines:
##format=VCFv3.2
##format=VCFv3.2
8 152578 . c t 87 . depth=108 GT:GQ:GD 1/1:95:31 1/1:89:30 1/1:100:47
8 152578 . c t 87 . depth=108 GT:GQ:GD 1/1:95:31 1/1:89:30 1/1:100:47
Output VCF headlines:
##format=VCFv3.2
##format=VCFv3.2
