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Revision as of 10:00, 20 May 2015
, 10:00, 20 May 2015→Running GotCloud Indel
== Running GotCloud Indel ==
== Running GotCloud Indel ==
${GC}/gotcloud indel --conf ${SS}/gotcloud.conf --numjobs 6 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
${GC}/gotcloud indel --conf ${SS}/gotcloud.conf --numjobs 3 --region 22:36000000-37000000 --base_prefix ${SS} --outdir ${OUT}
* <code>${GC}/gotcloud</code> runs GotCloud
* <code>${GC}/gotcloud</code> runs GotCloud
* <code>indel</code> tells GotCloud you want to run the indel calling pipeline.
* <code>indel</code> tells GotCloud you want to run the indel calling pipeline.
