1,102
edits
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REF AT
REF AT
ALT T #INDEL, 1 del
ALT T #INDEL, 1 del
#Note that although the padding base differs - A vs T, this is actually a simple indel because it is simply a deletion of a A base.
#If you right align this instead of left aligning, then the padding will be T on both the reference and alternative alleles.
#Simple Indel classification should be invariant whether it is left or right aligned.
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