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737 bytes added
, 15:13, 14 February 2016
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| no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7 | | no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7 |
| no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br> | | no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br> |
− | trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6. | + | trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6. |
− | A-B 3269285 | + | A-B 3269285 #TRs specific to vntrs.sites.bcf |
− | A-B~ 1666185 | + | A-B~ 1666185 #TRs in vntrs.sites.bcf that overlap partially with at least one TR in TRF(lobSTR) but does not overlap exactly with another TR. |
− | A&B1 725404 | + | A&B1 725404 #TRs in vntrs.sites.bcf that overlap exactly with at least one TR in TRF(lobSTR) |
− | A&B2 723195 | + | A&B2 723195 #TRs in TRF(lobSTR) that overlap exactly with at least one TR in vntrs.sites.bcf |
− | B-A~ 710075 | + | B-A~ 710075 #TRs in TRF(lobSTR) that overlap partially with at least one TR in vntrs.sites.bcf but does not overlap exactly with another TR. |
− | B-A 205246 <br> | + | B-A 205246 #TRs specific to TRF(lobSTR) |
| + | #note that the first 3 rows should sum up to the number of TRs in vntrs.sites.bcf |
| + | #and the 4th to 6th rows should sum up to the number of TRs in TRF( lobSTR) |
| + | #This basically allows us to see the m to n overlapping in overlapping TRs<br> |
| trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6. | | trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6. |
| A-B 3291652 | | A-B 3291652 |