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| Class used for reading/validating a fastq file.
| Class used for reading/validating a fastq file.
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|-
| <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classBaseCount.html BaseCount]</code>
| <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classBaseCount.html BaseCount]</code>
| Wrapper around an array that has one index per base and an extra index for a total count of all bases. This class is used to keep a count of the number of times each index has occurred. It can print a percentage of the occurrence of each base against the total number of bases.
| Wrapper around an array that has one index per base and an extra index for a total count of all bases. This class is used to keep a count of the number of times each index has occurred. It can print a percentage of the occurrence of each base against the total number of bases.
|-
|-
| <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classBaseComposition.html BaseComposition]</code>
| <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classBaseComposition.html BaseComposition]</code>
| Class that tracks the composition of base by read location.
| Class that tracks the composition of base by read location.
|-
|-
| <code>[http://www.sph.umich.edu/csg/mktrost/doxygen/current/classFastQStatus.html FastQStatus]</code>
| <code>[http://csg.sph.umich.edu//mktrost/doxygen/current/classFastQStatus.html FastQStatus]</code>
| Status for FastQ operations.
| Status for FastQ operations.
|}
|}
== FASTQ Output ==
== FASTQ Output ==
