From Genome Analysis Wiki
Jump to navigationJump to search
76 bytes added
, 22:02, 8 April 2019
Line 46: |
Line 46: |
| | | |
| This code assumes that at most 1000 bases are clipped at the start of a read. | | This code assumes that at most 1000 bases are clipped at the start of a read. |
| + | |
| + | |
| + | Deduping requires two passes through the file, so cannot read from stdin. |
| | | |
| ==Handling Recalibration== | | ==Handling Recalibration== |