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120 bytes added
, 22:17, 8 April 2019
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| Use <code>{{{param|--in}}}</code> followed by your file name to specify the SAM/BAM input file.}} | | Use <code>{{{param|--in}}}</code> followed by your file name to specify the SAM/BAM input file.}} |
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− | The program automatically determines if your input file is SAM/BAM/uncompressed BAM without any input other than a filename from the user, unless your input file is stdin. | + | The program automatically determines if your input file is SAM/BAM/uncompressed BAM without any input other than a filename from the user{{#if: {{{noStdin|.}}}|, unless your input file is stdin.}} |
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− | A <code>-</code> is used to indicate to read from stdin and the extension is used to determine the file type (no extension indicates SAM). | + | {{#if: {{{noStdin|This tool does not support input from stdin.}}}|A <code>-</code> is used to indicate to read from stdin and the extension is used to determine the file type (no extension indicates SAM).}} |
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| {|border="1" cellspacing="0" cellpadding="2" | | {|border="1" cellspacing="0" cellpadding="2" |
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| | <code>{{#if: {{{noParam|}}} | |--in}} yourFileName</code> | | | <code>{{#if: {{{noParam|}}} | |--in}} yourFileName</code> |
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− | |SAM from stdin | + | |{{#if: {{{noStdin|}}} | |SAM from stdin}} |
| | <code>{{#if: {{{noParam|}}} | |--in}} -</code> | | | <code>{{#if: {{{noParam|}}} | |--in}} -</code> |
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