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Minimac4

219 bytes added, 22:09, 19 July 2019
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Usage
Here <font face=Courier>refPanel.m3vcf</font> is the reference panel used in M3VCF format (e.g. 1000 Genomes), <font face=Courier>targetStudy.vcf</font> is the phased GWAS data in VCF format, and <font face=Courier>testRun</font> is the prefix for the output files.
 
If the reference panel is in VCF format, please use Minimac3 to convert it into M3VCF format first.
../bin/Minimac3 --refHaps refPanel.vcf \
--processReference \
--prefix refPanel
=== Multi-Threading ===
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