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Minimac4

44 bytes added, 22:29, 19 July 2019
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The Minimac3 mailing list has been renamed as the Minimac4 mailing list. If you were already a member, no need to re-join. If not, please join our [https://groups.google.com/forum/embed/?place=forum/minimac4-help&umich.edu| mailing list] to get updates about future releases or report possible bugs or email them to [mailto:yukt@umich.edu Ketian Yu] or [mailto:sayantan@umich.edu Sayantan Das].'''
= Download Installation =
'''Minimac4 (version 1.0.0, released 2.14.2018)''' is currently available on [https://github.com/Santy-8128/Minimac4 Minimac4 Github].  The easiest way to install Minimac4 and its dependencies is to use the install.sh file provided. git clone <nowiki>https://github.com/statgen/Minimac4.git</nowiki> cd Minimac4 bash install.sh Please follow see [https://github.com/Santy-8128/Minimac4 Minimac4 Github] for the full instructions in the GitHub repository for installation.
Commonly used reference panels in <font face=Courier>M3VCF</font> format are available for download in [[#Reference Panels for Download | Reference Panels]].
= Usage =
The easiest way to install Minimac4 and its dependencies is to use the install.sh file provided.
git clone <nowiki>https://github.com/statgen/Minimac4.git</nowiki>
cd Minimac4
bash install.sh
 
A typical Minimac4 command line for imputation is as follows
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