Open main menu

Genome Analysis Wiki β

Changes

SAM

No change in size, 11:05, 30 July 2010
no edit summary
* length of this group from the leftmost position to the rightmost position, ISIZE or TLEN
* the query sequence for this alignment, SEQ
* the query quality for this alignment, [[SAM# What is QUAL?|QUAL]], one for each base in the query sequence.* Additional optional information is also contained within the alignment, [[SAM#What are TAGs?|TAGs]]. A bunch of different information can be stored here and they appear as key/value pairs. See the spec for a detailed list of commonly used tags and what they mean.
==== What is a CIGAR? ====