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22 bytes removed, 03:39, 14 December 2009
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STOP_GAINED=MAPK12:Trp49035685stop[-] means that the SNP is at position 49035685 in gene MAPK12 with a minus strand and it changes amino-acid Trp to a stop codon.
The annotating result will be added to the entry "INFO" of the input VCF SNP file and outputted together with other information in the input VCF SNP file. Here is an example of output VCF file headlines:

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