550
edits
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--states ST
--states ST
use a random subset of ST haplotypes as reference. We recommend values between 200 - 500. More states result in more accurate haplotypes, but are computational more expensive.
use a random subset of ST haplotypes as reference. We recommend values between 200 - 500. More states result in more accurate haplotypes, but are computational more expensive and require more memory.
--interim I
--interim I
--compact
--compact
reduces the amount of memory needed dramatically, but doubles execution time.
reduces the amount of memory needed dramatically, but doubles execution time.
=== Step 2: Imputation ===
=== Step 2: Imputation ===
