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13 bytes added ,  17:27, 4 October 2010
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  --interim I
 
  --interim I
output a set of best-guess haplotypes every I rounds by building consensus from all previous Markov iterations. These haplotypes can be used for imputation.
+
output a set of best-guess haplotypes every I rounds by building consensus from all previous Markov iterations. These intermediate haplotypes can be used for imputation.
    
  --sample SA
 
  --sample SA
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