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=== Step 2: Imputation ===
=== Step 2: Imputation ===
Imputing genotypes using '''minimac''' is an easy straightforward process: after selecting a set of reference haplotypes (see below how to get the latest 1000 Genomes reference panel ready to go with '''minimac''' ), plugging-in the target haplotypes from the pre-phasing step and setting the number of rounds to use for the model parameter estimation, samples get imputed once a second.
==== Reference Haplotypes ====
==== Reference Haplotypes ====
