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--snps target.snps
--snps target.snps
Target snps (from the pre-phasing step)
Target snps (from the pre-phasing step)
--rounds R
--rounds [5]
how many rounds should be run to optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval.
how many rounds should be run to optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval.
--states S
--states [200]
how many haplotypes to use for parameter optimization
how many haplotypes to use for parameter optimization.
--em
--em
use an e-m algorithm, instead of mcmc, for parameter optimization
use an e-m algorithm, instead of mcmc, for parameter optimization
