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Minimac

7 bytes added, 06:52, 7 October 2010
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--snps target.snps
Target snps (from the pre-phasing step)
--rounds R[5]
how many rounds should be run to optimize the model parameters: (i) error rate for each marker (*.erate) and (ii) crossover rates (*.rec) for each interval.
--states S[200]how many haplotypes to use for parameter optimization.
--em
use an e-m algorithm, instead of mcmc, for parameter optimization
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