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39 bytes added, 02:24, 12 October 2010
| Phased haplotypes where missing genotypes will be imputed.
| <code>--rounds 5</code>
| Rounds of optimization for model parameters, which describe population recombination rates and per SNP error rates.
| <code>--states 200</code>
| Maximum number of reference (or target) haplotypes to examined during parameter optimization.
| <code>--prefix imputed</code>
| Optionally, a string that is used to help generate output file names.