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413 bytes added, 11:43, 15 October 2010
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This page documents how to perform variant calling from low-coverage sequencing data using glfmultiples and thunder. The pipeline was originally developed by [ Yun Li] for the 1000 Genomes Low Coverage Pilot Project.
== Input Data ==
== How to Run ==
This variant calling pipeline has two steps. (step 1) promotion of a set of potential polymorphisms; and (step 2) genotype/haplotype calling using LD information.
(step 1) Site promotion using software glfMultiples [ GPT_Freq].
== Important Filters ==

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