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Revision as of 13:12, 15 October 2010

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== Input Data ==
 
== Input Data ==
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To get started, you will need glf files in the standard format [http://samtools.sourceforge.net/SAM1.pdf glf format].
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To get started, you will need glf files in the standard format [http://samtools.sourceforge.net/SAM1.pdf glf format]. Sample files are available at [ftp://share.sph.umich.edu/1000genomes/pilot1/examples/glf.tgz sample glf files].
    
If you do not have glf files, you can generate them from bam files (bam format also specified in [http://samtools.sourceforge.net/SAM1.pdf glf format bam format]) using the following command line:
 
If you do not have glf files, you can generate them from bam files (bam format also specified in [http://samtools.sourceforge.net/SAM1.pdf glf format bam format]) using the following command line:
Ylwtx
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