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, 15:17, 15 October 2010
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| (step 1) Site promotion using software glfMultiples [https://www.sph.umich.edu/csg/yli/GPT_Freq.011.source.tgz GPT_Freq]. | | (step 1) Site promotion using software glfMultiples [https://www.sph.umich.edu/csg/yli/GPT_Freq.011.source.tgz GPT_Freq]. |
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− | GPT_Freq -b my.out -p 0.9 --minDepth 10 --maxDepth 1000 --sitedepth *.glf | + | GPT_Freq -b my.out -p 0.9 --minDepth 10 --maxDepth 1000 *.glf |
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| + | (step 2) Genotype/haplotype calling using thunder [https://www.sph.umich.edu/csg/yli/] |
| == Important Filters == | | == Important Filters == |