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Minimac

451 bytes added, 21:13, 24 October 2010
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= Performance =
 
== Pre-phasing ==
For the pre-phasing step the cost for increasing the number of states is quadratically and the cost for rounds is linear.
 
 
{| class="wikitable" border="1" cellpadding="2"
|- bgcolor="lightgray"
! States
! Cost
|-
| 100 states
| 3min
| 200 states
| 12min = (3min * 2^2)
| 400 states
| 56min = (3min * 4^2)
| 500 states
| 75min = (3min * 5^2)
|}
 
 
rounds is linear: 500states 10rounds = 750min * 10 = 7500 min
 
 
 
 
== Imputation ==
 
A good rule of thumb is that minimac should take about 1 hour to impute 1,000,000 markers in 1,000 individuals using a reference panel with 100 haplotypes. Performance should scale linearly with respect to all these factors. So, your approximate computing time in hours should be about:
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