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MaCH FAQ

99 bytes added, 09:18, 5 December 2010
How do I get reference files for an region of interest?
awk '{print $3}' orig.hap | cut -c${first}-${last} > region.hap
 
The created reference files are in MaCH format. You do NOT need to turn on --hapmapFormat option.
== Do I always have to sort the pedigree file by marker position? ==
212
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