Changes

;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s  

;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s  

   source code [[File:vcfReader.v1.tar]]

   source code [[File:vcfReader.v1.tar]]

   Again, extract the tar file and then go into the directory to type make all to compile the code, you then will find binary file in the executables folder.  

   Again, extract the tar file and then go into the directory to type make all to compile the code,

            you then will find binary file in the executables folder.  

  Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list.

  Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first  

to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list.

Data File PREPARATION

Data File PREPARATION