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;--genofile: A genotype 012 matrix (.012 is the file) This file can be prepared by using the prepare012s
source code [[File:vcfReader.v1.tar]]
Again, extract the tar file and then go into the directory to type make all to compile the code, you then will find binary file in the executables folder.
Note: You should use Yanming's vcf annotation [http://genome.sph.umich.edu/wiki/VcfCodingSnps] on your vcf file first to output a annotated vcf file. You SHOULD record the log file, which will be later used to define the gene list.
Data File PREPARATION