From Genome Analysis Wiki
== DESCRIPTION ==Open source, freely available (GPL license), easy to use APIs*File/Stream I/O – uncompressed, BGZF, GZIP, stdin, stdout*Common file formats – SAM/BAM, FASTQ, GLF* *Indexed access to BAM files**Accessors to get/set values*Utility classes, including:**Cigar – interpretation and mapping between query and reference**Pileup – structured access to data by individual reference position
= Contents ===
* [[StatGenLibrary: general]] - General classes for file processing and performing common tasks (used by most other libraries).
* [[StatGenLibrary: BAM]] - Classes specific for reading/writing/analyzing SAM/BAM files.
* [[StatGenLibrary: FASTQ]] - Classes specific for reading/writing/analyzing FastQ files.
[http://www.sph.umich.edu/csg/mktrost/doxygen/version.0.1.2/ Version 0.1.2 Library Documentation in Doxygen]
http://www.sph.umich. edu/csg/mktrost/doxygen/march22_2011/ 3/22/ 11 Library Documentation in Doxygen]
== Using the Library ==
To use the StatGenLibrary, first download:
*Build: type make
== Creating programs ==
If you are creating a program, you can start with Makefile.src found at statgen/src/.