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440 bytes added
, 14:18, 4 February 2010
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| === Raw Sequence Line === | | === Raw Sequence Line === |
− | *A base sequence should have non-zero length.
| + | {| class="wikitable" border="1" |
− | *Validates the base sequences against the characters allowed via configuration.
| + | |- |
− | ** Base Only: A C T G N a c t g n
| + | ! Validation Criteria |
− | ** Color Space Only: 0 1 2 3 .(period)
| + | ! Error Message |
− | ** Base or Color Space: A C T G N a c t g n 0 1 2 3 .(period)
| + | |- |
− | *Reads should be of a minimum length; many mappers will get into trouble with very short reads.
| + | | A base sequence should have non-zero length. |
| + | | ERROR on Line <current line #>: |
| + | |- |
| + | | All characters in the base sequence must be in the allowable set specified via configuration. |
| + | * Base Only: A C T G N a c t g n |
| + | * Color Space Only: 0 1 2 3 .(period) |
| + | * Base or Color Space: A C T G N a c t g n 0 1 2 3 .(period) |
| + | | ERROR on Line <current line #>: |
| + | |- |
| + | | Reads should be of a minimum length; many mappers will get into trouble with very short reads. |
| + | | ERROR on Line <current line #>: |
| + | |} |
| | | |
| === Plus Line === | | === Plus Line === |
| | | |
| === Quality String Line === | | === Quality String Line === |
− | *A quality string should be present for every base sequence.
| + | === Raw Sequence Line === |
− | *Paired quality and base sequences should be of the same length.
| + | {| class="wikitable" border="1" |
− | *Valid quality values should all have ASCII codes > 32.
| + | |- |
| + | ! Validation Criteria |
| + | ! Error Message |
| + | |- |
| + | | A quality string should be present for every base sequence. |
| + | | ERROR on Line <current line #>: |
| + | |- |
| + | | Paired quality and base sequences should be of the same length. |
| + | | ERROR on Line <current line #>: |
| + | |- |
| + | | Valid quality values should all have ASCII codes > 32. |
| + | | ERROR on Line <current line #>: |
| + | |} |
| | | |
| == Additional Features == | | == Additional Features == |