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== FastQ Validator Output ==
== FastQ Validator Output ==
When running the fastQValidator Executable, the output starts with a summary of the parameters:
The following parameters are in effect:
FastQ File Name : testFile.txt (-fname)
Min Read Length : 10 (-l9999)
Max Reported Errors : 100 (-e9999)
BaseType : BC (-bname)
TestMode : (-tname)
Both the Executable and the Library outputs the following:
*Error messages for the first Configurable number of errors.:
ERROR on Line 25: The sequence identifier line was too short.
ERROR on Line 29: First line of a sequence does not begin wtih @
ERROR on Line 33: No Sequence Identifier specified before the comment.
*Base Composition Percentages by Index:
Base Composition Statistics:
Read Index %A %C %G %T %N Total Reads At Index
0 100.00 0.00 0.00 0.00 0.00 20
1 5.00 95.00 0.00 0.00 0.00 20
2 5.00 0.00 5.00 90.00 0.00 20
*Summary of the number of lines, sequences, and errors:
Finished processing testFile.txt with 92 lines containing 20 sequences.
There were a total of 17 errors.
