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Evaluating a Read Mapper on Simulated Data

269 bytes added, 18:33, 8 February 2010
Available Test Datasets
* Format
both base space and color space
both single end and paired end, and paired end reads are given insert size 1500. * Program (generator )
delXX: Delete a random XX-length piece for a single read, or at the same position for a paired reads
e.g. ./generator bs se exact -n 100 -l 35 * OutputSimulation file are named like: BS_SE_EXACT_1000000_35, meaning base space, single end, exact (no polymorphism), 1M reads, 35 bp per read. For each read, the tag was named in a similar way to Sanger's.